Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
RFC4P35249 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC25.17■■□□□ 1.62
RFC4P35249 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
RFC4P35249 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC25.16■■□□□ 1.62
RFC4P35249 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
RFC4P35249 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC25.16■■□□□ 1.62
RFC4P35249 INGX-201ENST00000359239 846 ntBASIC25.16■■□□□ 1.62
RFC4P35249 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC25.16■■□□□ 1.62
RFC4P35249 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
RFC4P35249 AC063952.2-201ENST00000498792 1227 ntBASIC25.16■■□□□ 1.62
RFC4P35249 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
RFC4P35249 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC25.16■■□□□ 1.62
RFC4P35249 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC25.16■■□□□ 1.62
RFC4P35249 AC091076.1-201ENST00000610741 619 ntBASIC25.16■■□□□ 1.62
RFC4P35249 FAM87A-204ENST00000613235 858 ntBASIC25.16■■□□□ 1.62
RFC4P35249 AL358472.4-201ENST00000633140 710 ntBASIC25.16■■□□□ 1.62
RFC4P35249 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC25.16■■□□□ 1.62
RFC4P35249 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
RFC4P35249 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
RFC4P35249 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
RFC4P35249 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC25.15■■□□□ 1.62
RFC4P35249 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC25.15■■□□□ 1.62
RFC4P35249 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC25.15■■□□□ 1.62
RFC4P35249 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC25.15■■□□□ 1.62
RFC4P35249 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
RFC4P35249 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC25.15■■□□□ 1.62
RFC4P35249 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC25.15■■□□□ 1.62
RFC4P35249 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC25.15■■□□□ 1.62
RFC4P35249 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC25.15■■□□□ 1.62
RFC4P35249 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
RFC4P35249 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC25.14■■□□□ 1.62
RFC4P35249 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
RFC4P35249 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
RFC4P35249 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
RFC4P35249 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
RFC4P35249 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
RFC4P35249 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC25.14■■□□□ 1.62
RFC4P35249 AC004980.1-204ENST00000429707 299 ntBASIC25.14■■□□□ 1.62
RFC4P35249 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC25.14■■□□□ 1.62
RFC4P35249 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC25.14■■□□□ 1.62
RFC4P35249 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC25.14■■□□□ 1.62
RFC4P35249 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC25.14■■□□□ 1.62
RFC4P35249 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC25.14■■□□□ 1.61
RFC4P35249 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
RFC4P35249 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.61
RFC4P35249 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.61
RFC4P35249 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
RFC4P35249 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC25.13■■□□□ 1.61
RFC4P35249 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC25.13■■□□□ 1.61
RFC4P35249 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
RFC4P35249 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC25.13■■□□□ 1.61
RFC4P35249 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
RFC4P35249 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
RFC4P35249 ECEL1P1-201ENST00000373592 1742 ntBASIC25.13■■□□□ 1.61
RFC4P35249 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC25.13■■□□□ 1.61
RFC4P35249 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
RFC4P35249 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC25.13■■□□□ 1.61
RFC4P35249 WDR88-203ENST00000592765 651 ntTSL 5 BASIC25.13■■□□□ 1.61
RFC4P35249 AC131212.4-201ENST00000623606 975 ntBASIC25.13■■□□□ 1.61
RFC4P35249 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC25.13■■□□□ 1.61
RFC4P35249 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
RFC4P35249 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC25.13■■□□□ 1.61
RFC4P35249 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC25.13■■□□□ 1.61
RFC4P35249 H19-201ENST00000411754 1788 ntTSL 5 BASIC25.13■■□□□ 1.61
RFC4P35249 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
RFC4P35249 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
RFC4P35249 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
RFC4P35249 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC25.12■■□□□ 1.61
RFC4P35249 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
RFC4P35249 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.61
RFC4P35249 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC25.12■■□□□ 1.61
RFC4P35249 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
RFC4P35249 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC25.12■■□□□ 1.61
RFC4P35249 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC25.12■■□□□ 1.61
RFC4P35249 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
RFC4P35249 MED25-212ENST00000618715 1467 ntTSL 5 BASIC25.12■■□□□ 1.61
RFC4P35249 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC25.12■■□□□ 1.61
RFC4P35249 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC25.12■■□□□ 1.61
RFC4P35249 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC25.12■■□□□ 1.61
RFC4P35249 STK25-204ENST00000405585 1643 ntTSL 2 BASIC25.12■■□□□ 1.61
RFC4P35249 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
RFC4P35249 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC25.11■■□□□ 1.61
RFC4P35249 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
RFC4P35249 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
RFC4P35249 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC25.11■■□□□ 1.61
RFC4P35249 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
RFC4P35249 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC25.11■■□□□ 1.61
RFC4P35249 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
RFC4P35249 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
RFC4P35249 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
RFC4P35249 AC117947.1-201ENST00000427448 529 ntBASIC25.11■■□□□ 1.61
RFC4P35249 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC25.11■■□□□ 1.61
RFC4P35249 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC25.11■■□□□ 1.61
RFC4P35249 FDX2-206ENST00000492239 773 ntTSL 2 BASIC25.11■■□□□ 1.61
RFC4P35249 NMU-205ENST00000511469 756 ntTSL 3 BASIC25.11■■□□□ 1.61
RFC4P35249 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC25.11■■□□□ 1.61
RFC4P35249 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
RFC4P35249 SLC25A1P4-201ENST00000567977 778 ntBASIC25.11■■□□□ 1.61
RFC4P35249 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC25.11■■□□□ 1.61
RFC4P35249 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC25.11■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms