Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
HOXA9P31269 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.84■□□□□ 0.93
HOXA9P31269 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
HOXA9P31269 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.84■□□□□ 0.93
HOXA9P31269 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC20.84■□□□□ 0.93
HOXA9P31269 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC20.84■□□□□ 0.93
HOXA9P31269 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC20.84■□□□□ 0.93
HOXA9P31269 RN7SL850P-201ENST00000579959 291 ntBASIC20.84■□□□□ 0.93
HOXA9P31269 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC20.84■□□□□ 0.93
HOXA9P31269 AC005363.2-201ENST00000618631 242 ntBASIC20.84■□□□□ 0.93
HOXA9P31269 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
HOXA9P31269 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC20.84■□□□□ 0.93
HOXA9P31269 FEM1AP4-201ENST00000443167 1987 ntBASIC20.84■□□□□ 0.93
HOXA9P31269 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
HOXA9P31269 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HOXA9P31269 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
HOXA9P31269 PLK5-205ENST00000642079 1969 ntBASIC20.83■□□□□ 0.93
HOXA9P31269 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
HOXA9P31269 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
HOXA9P31269 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
HOXA9P31269 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.83■□□□□ 0.93
HOXA9P31269 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
HOXA9P31269 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC20.83■□□□□ 0.93
HOXA9P31269 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC20.83■□□□□ 0.93
HOXA9P31269 MIR1238-201ENST00000408483 83 ntBASIC20.83■□□□□ 0.93
HOXA9P31269 C1QL1P1-201ENST00000568105 661 ntBASIC20.83■□□□□ 0.93
HOXA9P31269 AC026271.3-201ENST00000571884 352 ntBASIC20.83■□□□□ 0.93
HOXA9P31269 P4HB-223ENST00000576390 439 ntTSL 4 BASIC20.83■□□□□ 0.93
HOXA9P31269 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC20.83■□□□□ 0.93
HOXA9P31269 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
HOXA9P31269 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC20.83■□□□□ 0.93
HOXA9P31269 KRT8P9-201ENST00000558927 1449 ntBASIC20.83■□□□□ 0.93
HOXA9P31269 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
HOXA9P31269 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
HOXA9P31269 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.83■□□□□ 0.92
HOXA9P31269 AP006587.1-201ENST00000534129 1502 ntBASIC20.83■□□□□ 0.92
HOXA9P31269 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
HOXA9P31269 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HOXA9P31269 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.82■□□□□ 0.92
HOXA9P31269 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HOXA9P31269 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC20.82■□□□□ 0.92
HOXA9P31269 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC20.82■□□□□ 0.92
HOXA9P31269 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC20.82■□□□□ 0.92
HOXA9P31269 NAPSB-206ENST00000562112 1266 ntBASIC20.82■□□□□ 0.92
HOXA9P31269 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HOXA9P31269 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HOXA9P31269 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HOXA9P31269 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC20.82■□□□□ 0.92
HOXA9P31269 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HOXA9P31269 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HOXA9P31269 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
HOXA9P31269 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HOXA9P31269 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.81■□□□□ 0.92
HOXA9P31269 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
HOXA9P31269 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HOXA9P31269 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
HOXA9P31269 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.81■□□□□ 0.92
HOXA9P31269 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
HOXA9P31269 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HOXA9P31269 AC007375.3-201ENST00000600936 2314 ntBASIC20.81■□□□□ 0.92
HOXA9P31269 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC20.81■□□□□ 0.92
HOXA9P31269 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
HOXA9P31269 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC20.81■□□□□ 0.92
HOXA9P31269 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC20.81■□□□□ 0.92
HOXA9P31269 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC20.81■□□□□ 0.92
HOXA9P31269 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC20.81■□□□□ 0.92
HOXA9P31269 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
HOXA9P31269 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC20.81■□□□□ 0.92
HOXA9P31269 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC20.81■□□□□ 0.92
HOXA9P31269 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HOXA9P31269 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC20.8■□□□□ 0.92
HOXA9P31269 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXA9P31269 AC116351.2-201ENST00000606540 1585 ntBASIC20.8■□□□□ 0.92
HOXA9P31269 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXA9P31269 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.8■□□□□ 0.92
HOXA9P31269 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
HOXA9P31269 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXA9P31269 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXA9P31269 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXA9P31269 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXA9P31269 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC20.8■□□□□ 0.92
HOXA9P31269 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXA9P31269 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
HOXA9P31269 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
HOXA9P31269 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC20.8■□□□□ 0.92
HOXA9P31269 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC20.8■□□□□ 0.92
HOXA9P31269 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC20.8■□□□□ 0.92
HOXA9P31269 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
HOXA9P31269 AL445675.2-201ENST00000620291 557 ntBASIC20.8■□□□□ 0.92
HOXA9P31269 AL031985.4-201ENST00000642138 673 ntBASIC20.8■□□□□ 0.92
HOXA9P31269 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.8■□□□□ 0.92
HOXA9P31269 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXA9P31269 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXA9P31269 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXA9P31269 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
HOXA9P31269 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.79■□□□□ 0.92
HOXA9P31269 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
HOXA9P31269 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HOXA9P31269 AC005229.4-201ENST00000610085 2198 ntBASIC20.79■□□□□ 0.92
HOXA9P31269 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms