Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL6A3P12111 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL6A3P12111 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC20.99■□□□□ 0.95
COL6A3P12111 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
COL6A3P12111 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL6A3P12111 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL6A3P12111 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC20.99■□□□□ 0.95
COL6A3P12111 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL6A3P12111 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC20.98■□□□□ 0.95
COL6A3P12111 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
COL6A3P12111 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC20.98■□□□□ 0.95
COL6A3P12111 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
COL6A3P12111 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL6A3P12111 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
COL6A3P12111 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC20.98■□□□□ 0.95
COL6A3P12111 AC116562.4-202ENST00000641738 218 ntBASIC20.98■□□□□ 0.95
COL6A3P12111 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
COL6A3P12111 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.98■□□□□ 0.95
COL6A3P12111 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC20.98■□□□□ 0.95
COL6A3P12111 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL6A3P12111 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
COL6A3P12111 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
COL6A3P12111 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL6A3P12111 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL6A3P12111 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC20.98■□□□□ 0.95
COL6A3P12111 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC20.98■□□□□ 0.95
COL6A3P12111 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.98■□□□□ 0.95
COL6A3P12111 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
COL6A3P12111 PMS2P2-201ENST00000425039 1128 ntBASIC20.97■□□□□ 0.95
COL6A3P12111 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC20.97■□□□□ 0.95
COL6A3P12111 AL031432.5-201ENST00000641059 760 ntBASIC20.97■□□□□ 0.95
COL6A3P12111 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
COL6A3P12111 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC20.97■□□□□ 0.95
COL6A3P12111 LY6E-213ENST00000522528 606 ntTSL 3 BASIC20.97■□□□□ 0.95
COL6A3P12111 PENK-208ENST00000523051 772 ntTSL 5 BASIC20.97■□□□□ 0.95
COL6A3P12111 ZNF444P1-201ENST00000559497 298 ntBASIC20.97■□□□□ 0.95
COL6A3P12111 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
COL6A3P12111 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL6A3P12111 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL6A3P12111 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.97■□□□□ 0.95
COL6A3P12111 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC20.97■□□□□ 0.95
COL6A3P12111 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL6A3P12111 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.97■□□□□ 0.95
COL6A3P12111 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL6A3P12111 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL6A3P12111 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
COL6A3P12111 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL6A3P12111 MRPL3P1-201ENST00000400109 1033 ntBASIC20.97■□□□□ 0.95
COL6A3P12111 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
COL6A3P12111 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
COL6A3P12111 YBX1P10-201ENST00000444752 975 ntBASIC20.97■□□□□ 0.95
COL6A3P12111 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC20.97■□□□□ 0.95
COL6A3P12111 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
COL6A3P12111 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL6A3P12111 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL6A3P12111 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL6A3P12111 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
COL6A3P12111 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COL6A3P12111 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
COL6A3P12111 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL6A3P12111 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL6A3P12111 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
COL6A3P12111 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.96■□□□□ 0.95
COL6A3P12111 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL6A3P12111 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COL6A3P12111 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
COL6A3P12111 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC20.96■□□□□ 0.95
COL6A3P12111 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC20.96■□□□□ 0.95
COL6A3P12111 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC20.96■□□□□ 0.95
COL6A3P12111 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COL6A3P12111 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
COL6A3P12111 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL6A3P12111 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL6A3P12111 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC20.95■□□□□ 0.94
COL6A3P12111 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC20.95■□□□□ 0.94
COL6A3P12111 SLC25A1P1-201ENST00000528351 927 ntBASIC20.95■□□□□ 0.94
COL6A3P12111 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC20.95■□□□□ 0.94
COL6A3P12111 PNN-205ENST00000556530 601 ntTSL 2 BASIC20.95■□□□□ 0.94
COL6A3P12111 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
COL6A3P12111 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL6A3P12111 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC20.95■□□□□ 0.94
COL6A3P12111 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
COL6A3P12111 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC20.95■□□□□ 0.94
COL6A3P12111 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL6A3P12111 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC20.95■□□□□ 0.94
COL6A3P12111 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC20.95■□□□□ 0.94
COL6A3P12111 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
COL6A3P12111 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC20.95■□□□□ 0.94
COL6A3P12111 AL023973.1-201ENST00000624619 620 ntBASIC20.95■□□□□ 0.94
COL6A3P12111 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL6A3P12111 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL6A3P12111 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL6A3P12111 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL6A3P12111 AL035633.1-201ENST00000406139 838 ntBASIC20.94■□□□□ 0.94
COL6A3P12111 MFAP1P1-201ENST00000442257 1255 ntBASIC20.94■□□□□ 0.94
COL6A3P12111 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC20.94■□□□□ 0.94
COL6A3P12111 AC139530.1-201ENST00000575312 1977 ntBASIC20.94■□□□□ 0.94
COL6A3P12111 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
COL6A3P12111 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC20.94■□□□□ 0.94
COL6A3P12111 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms