Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SNX3O60493 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SNX3O60493 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
SNX3O60493 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SNX3O60493 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.64■□□□□ 0.73
SNX3O60493 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
SNX3O60493 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
SNX3O60493 DUX4L19-201ENST00000557448 1267 ntBASIC19.64■□□□□ 0.73
SNX3O60493 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SNX3O60493 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC19.64■□□□□ 0.73
SNX3O60493 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SNX3O60493 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SNX3O60493 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SNX3O60493 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
SNX3O60493 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SNX3O60493 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SNX3O60493 PCDHB18P-201ENST00000524813 2368 ntBASIC19.64■□□□□ 0.73
SNX3O60493 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SNX3O60493 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
SNX3O60493 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
SNX3O60493 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SNX3O60493 AL133373.2-201ENST00000623187 2828 ntBASIC19.63■□□□□ 0.73
SNX3O60493 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
SNX3O60493 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC19.63■□□□□ 0.73
SNX3O60493 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SNX3O60493 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC19.63■□□□□ 0.73
SNX3O60493 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SNX3O60493 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SNX3O60493 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SNX3O60493 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC19.63■□□□□ 0.73
SNX3O60493 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
SNX3O60493 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC19.63■□□□□ 0.73
SNX3O60493 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC19.63■□□□□ 0.73
SNX3O60493 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SNX3O60493 POU5F1P4-201ENST00000413175 1085 ntBASIC19.63■□□□□ 0.73
SNX3O60493 KRT16P3-201ENST00000439127 1283 ntBASIC19.63■□□□□ 0.73
SNX3O60493 AC245052.3-201ENST00000450182 901 ntBASIC19.63■□□□□ 0.73
SNX3O60493 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC19.63■□□□□ 0.73
SNX3O60493 AL512631.2-201ENST00000604634 923 ntBASIC19.63■□□□□ 0.73
SNX3O60493 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SNX3O60493 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.63■□□□□ 0.73
SNX3O60493 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SNX3O60493 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SNX3O60493 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
SNX3O60493 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC19.63■□□□□ 0.73
SNX3O60493 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SNX3O60493 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
SNX3O60493 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SNX3O60493 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SNX3O60493 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
SNX3O60493 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SNX3O60493 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SNX3O60493 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SNX3O60493 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SNX3O60493 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SNX3O60493 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SNX3O60493 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
SNX3O60493 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
SNX3O60493 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SNX3O60493 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC19.62■□□□□ 0.73
SNX3O60493 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SNX3O60493 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
SNX3O60493 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC19.62■□□□□ 0.73
SNX3O60493 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SNX3O60493 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC19.61■□□□□ 0.73
SNX3O60493 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
SNX3O60493 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
SNX3O60493 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC19.61■□□□□ 0.73
SNX3O60493 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
SNX3O60493 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SNX3O60493 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SNX3O60493 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
SNX3O60493 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SNX3O60493 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
SNX3O60493 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SNX3O60493 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SNX3O60493 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SNX3O60493 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SNX3O60493 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SNX3O60493 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC19.61■□□□□ 0.73
SNX3O60493 AC008175.2-201ENST00000612840 297 ntBASIC19.61■□□□□ 0.73
SNX3O60493 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC19.61■□□□□ 0.73
SNX3O60493 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SNX3O60493 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SNX3O60493 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SNX3O60493 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SNX3O60493 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SNX3O60493 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SNX3O60493 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC19.6■□□□□ 0.73
SNX3O60493 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
SNX3O60493 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SNX3O60493 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SNX3O60493 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SNX3O60493 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SNX3O60493 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19.6■□□□□ 0.73
SNX3O60493 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
SNX3O60493 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
SNX3O60493 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SNX3O60493 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SNX3O60493 PTPA-214ENST00000423100 988 ntTSL 2 BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms