Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
PRKNO60260 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PRKNO60260 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
PRKNO60260 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
PRKNO60260 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC18.57■□□□□ 0.56
PRKNO60260 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PRKNO60260 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
PRKNO60260 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
PRKNO60260 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PRKNO60260 POM121L13P-201ENST00000422362 380 ntBASIC18.57■□□□□ 0.56
PRKNO60260 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC18.57■□□□□ 0.56
PRKNO60260 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PRKNO60260 MMD2-204ENST00000612910 778 ntTSL 5 BASIC18.57■□□□□ 0.56
PRKNO60260 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PRKNO60260 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC18.57■□□□□ 0.56
PRKNO60260 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC18.57■□□□□ 0.56
PRKNO60260 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PRKNO60260 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
PRKNO60260 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PRKNO60260 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC18.57■□□□□ 0.56
PRKNO60260 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
PRKNO60260 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PRKNO60260 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PRKNO60260 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PRKNO60260 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PRKNO60260 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC18.56■□□□□ 0.56
PRKNO60260 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PRKNO60260 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
PRKNO60260 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC18.56■□□□□ 0.56
PRKNO60260 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PRKNO60260 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC18.56■□□□□ 0.56
PRKNO60260 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PRKNO60260 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC18.56■□□□□ 0.56
PRKNO60260 AC069544.1-201ENST00000609399 999 ntBASIC18.56■□□□□ 0.56
PRKNO60260 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
PRKNO60260 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
PRKNO60260 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC18.56■□□□□ 0.56
PRKNO60260 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
PRKNO60260 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PRKNO60260 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
PRKNO60260 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
PRKNO60260 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PRKNO60260 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
PRKNO60260 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
PRKNO60260 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PRKNO60260 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
PRKNO60260 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
PRKNO60260 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
PRKNO60260 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
PRKNO60260 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
PRKNO60260 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
PRKNO60260 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
PRKNO60260 KRT17P3-201ENST00000420566 1262 ntBASIC18.55■□□□□ 0.56
PRKNO60260 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
PRKNO60260 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC18.55■□□□□ 0.56
PRKNO60260 THEM4-205ENST00000489410 643 ntTSL 2 BASIC18.55■□□□□ 0.56
PRKNO60260 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC18.55■□□□□ 0.56
PRKNO60260 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PRKNO60260 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
PRKNO60260 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PRKNO60260 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC18.55■□□□□ 0.56
PRKNO60260 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
PRKNO60260 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PRKNO60260 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC18.55■□□□□ 0.56
PRKNO60260 AL162377.1-201ENST00000618844 1793 ntBASIC18.55■□□□□ 0.56
PRKNO60260 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PRKNO60260 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC18.55■□□□□ 0.56
PRKNO60260 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PRKNO60260 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC18.55■□□□□ 0.56
PRKNO60260 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC18.55■□□□□ 0.56
PRKNO60260 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC18.54■□□□□ 0.56
PRKNO60260 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PRKNO60260 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PRKNO60260 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
PRKNO60260 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PRKNO60260 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC18.54■□□□□ 0.56
PRKNO60260 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
PRKNO60260 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PRKNO60260 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
PRKNO60260 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PRKNO60260 ABHD17AP6-201ENST00000458502 1044 ntBASIC18.54■□□□□ 0.56
PRKNO60260 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PRKNO60260 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC18.54■□□□□ 0.56
PRKNO60260 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PRKNO60260 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC18.54■□□□□ 0.56
PRKNO60260 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC18.54■□□□□ 0.56
PRKNO60260 AL031963.3-201ENST00000606441 850 ntBASIC18.54■□□□□ 0.56
PRKNO60260 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC18.54■□□□□ 0.56
PRKNO60260 AC073130.3-201ENST00000624389 2278 ntBASIC18.54■□□□□ 0.56
PRKNO60260 KRT8P17-201ENST00000453110 1448 ntBASIC18.54■□□□□ 0.56
PRKNO60260 AC099778.1-201ENST00000568593 1911 ntBASIC18.54■□□□□ 0.56
PRKNO60260 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC18.54■□□□□ 0.56
PRKNO60260 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC18.54■□□□□ 0.56
PRKNO60260 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PRKNO60260 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC18.54■□□□□ 0.56
PRKNO60260 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PRKNO60260 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
PRKNO60260 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
PRKNO60260 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
PRKNO60260 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms