Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
MSH4O15457 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC22.44■■□□□ 1.18
MSH4O15457 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
MSH4O15457 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
MSH4O15457 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
MSH4O15457 SERF2-207ENST00000409614 582 ntTSL 2 BASIC22.44■■□□□ 1.18
MSH4O15457 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC22.44■■□□□ 1.18
MSH4O15457 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC22.44■■□□□ 1.18
MSH4O15457 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
MSH4O15457 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC22.44■■□□□ 1.18
MSH4O15457 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
MSH4O15457 MAX-217ENST00000557277 728 ntTSL 3 BASIC22.44■■□□□ 1.18
MSH4O15457 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
MSH4O15457 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC22.44■■□□□ 1.18
MSH4O15457 AC099778.1-201ENST00000568593 1911 ntBASIC22.44■■□□□ 1.18
MSH4O15457 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC22.44■■□□□ 1.18
MSH4O15457 AL023875.1-201ENST00000640777 796 ntBASIC22.44■■□□□ 1.18
MSH4O15457 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC22.43■■□□□ 1.18
MSH4O15457 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC22.43■■□□□ 1.18
MSH4O15457 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
MSH4O15457 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
MSH4O15457 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC22.43■■□□□ 1.18
MSH4O15457 CD37-204ENST00000535669 1674 ntTSL 2 BASIC22.43■■□□□ 1.18
MSH4O15457 STK25-204ENST00000405585 1643 ntTSL 2 BASIC22.43■■□□□ 1.18
MSH4O15457 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
MSH4O15457 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
MSH4O15457 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
MSH4O15457 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
MSH4O15457 CALM3-202ENST00000391918 702 ntTSL 2 BASIC22.43■■□□□ 1.18
MSH4O15457 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
MSH4O15457 LY6E-205ENST00000519611 635 ntTSL 3 BASIC22.43■■□□□ 1.18
MSH4O15457 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC22.43■■□□□ 1.18
MSH4O15457 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC22.43■■□□□ 1.18
MSH4O15457 RNF121-214ENST00000533380 870 ntTSL 3 BASIC22.43■■□□□ 1.18
MSH4O15457 PNN-205ENST00000556530 601 ntTSL 2 BASIC22.43■■□□□ 1.18
MSH4O15457 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC22.43■■□□□ 1.18
MSH4O15457 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
MSH4O15457 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
MSH4O15457 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
MSH4O15457 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC22.43■■□□□ 1.18
MSH4O15457 LINC01521-201ENST00000504184 1943 ntBASIC22.43■■□□□ 1.18
MSH4O15457 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC22.43■■□□□ 1.18
MSH4O15457 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC22.43■■□□□ 1.18
MSH4O15457 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC22.43■■□□□ 1.18
MSH4O15457 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
MSH4O15457 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
MSH4O15457 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC22.42■■□□□ 1.18
MSH4O15457 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC22.42■■□□□ 1.18
MSH4O15457 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC22.42■■□□□ 1.18
MSH4O15457 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC22.42■■□□□ 1.18
MSH4O15457 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
MSH4O15457 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
MSH4O15457 AL158047.1-201ENST00000445918 881 ntBASIC22.42■■□□□ 1.18
MSH4O15457 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC22.42■■□□□ 1.18
MSH4O15457 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC22.42■■□□□ 1.18
MSH4O15457 Six3os1_6.1-201ENST00000620790 196 ntBASIC22.42■■□□□ 1.18
MSH4O15457 AL121906.2-201ENST00000621597 723 ntBASIC22.42■■□□□ 1.18
MSH4O15457 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
MSH4O15457 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC22.42■■□□□ 1.18
MSH4O15457 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
MSH4O15457 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC22.42■■□□□ 1.18
MSH4O15457 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
MSH4O15457 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC22.42■■□□□ 1.18
MSH4O15457 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC22.42■■□□□ 1.18
MSH4O15457 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC22.41■■□□□ 1.18
MSH4O15457 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC22.41■■□□□ 1.18
MSH4O15457 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
MSH4O15457 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
MSH4O15457 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
MSH4O15457 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC22.41■■□□□ 1.18
MSH4O15457 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC22.41■■□□□ 1.18
MSH4O15457 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC22.41■■□□□ 1.18
MSH4O15457 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC22.41■■□□□ 1.18
MSH4O15457 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC22.41■■□□□ 1.18
MSH4O15457 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC22.41■■□□□ 1.18
MSH4O15457 ISG20-202ENST00000379224 540 ntTSL 3 BASIC22.41■■□□□ 1.18
MSH4O15457 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC22.41■■□□□ 1.18
MSH4O15457 AC124016.1-201ENST00000609552 612 ntBASIC22.41■■□□□ 1.18
MSH4O15457 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC22.41■■□□□ 1.18
MSH4O15457 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC22.41■■□□□ 1.18
MSH4O15457 USP39-204ENST00000409766 2033 ntTSL 2 BASIC22.41■■□□□ 1.18
MSH4O15457 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC22.41■■□□□ 1.18
MSH4O15457 AL691432.2-201ENST00000607222 2038 ntBASIC22.41■■□□□ 1.18
MSH4O15457 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
MSH4O15457 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
MSH4O15457 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC22.4■■□□□ 1.18
MSH4O15457 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC22.4■■□□□ 1.18
MSH4O15457 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC22.4■■□□□ 1.18
MSH4O15457 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
MSH4O15457 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC22.4■■□□□ 1.18
MSH4O15457 PHGDH-210ENST00000641115 1638 ntBASIC22.4■■□□□ 1.18
MSH4O15457 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
MSH4O15457 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
MSH4O15457 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
MSH4O15457 PEX7-202ENST00000367756 680 ntTSL 3 BASIC22.4■■□□□ 1.18
MSH4O15457 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC22.4■■□□□ 1.18
MSH4O15457 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC22.4■■□□□ 1.18
MSH4O15457 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC22.4■■□□□ 1.18
MSH4O15457 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC22.4■■□□□ 1.18
MSH4O15457 AC116351.2-201ENST00000606540 1585 ntBASIC22.4■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms