Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB3O15347 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC16.04■□□□□ 0.16
HMGB3O15347 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB3O15347 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC16.04■□□□□ 0.16
HMGB3O15347 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB3O15347 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB3O15347 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB3O15347 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB3O15347 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB3O15347 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
HMGB3O15347 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
HMGB3O15347 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB3O15347 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB3O15347 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB3O15347 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB3O15347 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB3O15347 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB3O15347 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB3O15347 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC16.04■□□□□ 0.16
HMGB3O15347 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC16.04■□□□□ 0.16
HMGB3O15347 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB3O15347 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB3O15347 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC16.04■□□□□ 0.16
HMGB3O15347 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
HMGB3O15347 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB3O15347 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
HMGB3O15347 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB3O15347 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB3O15347 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB3O15347 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB3O15347 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB3O15347 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB3O15347 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB3O15347 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB3O15347 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB3O15347 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC16.03■□□□□ 0.16
HMGB3O15347 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
HMGB3O15347 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC16.03■□□□□ 0.16
HMGB3O15347 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC16.03■□□□□ 0.16
HMGB3O15347 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC16.03■□□□□ 0.16
HMGB3O15347 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
HMGB3O15347 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB3O15347 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB3O15347 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB3O15347 BX005040.4-201ENST00000637145 1518 ntBASIC16.03■□□□□ 0.16
HMGB3O15347 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC16.03■□□□□ 0.16
HMGB3O15347 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC16.03■□□□□ 0.16
HMGB3O15347 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB3O15347 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB3O15347 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB3O15347 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB3O15347 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB3O15347 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB3O15347 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
HMGB3O15347 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC16.02■□□□□ 0.16
HMGB3O15347 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
HMGB3O15347 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HMGB3O15347 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
HMGB3O15347 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
HMGB3O15347 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.16
HMGB3O15347 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
HMGB3O15347 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
HMGB3O15347 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC16.02■□□□□ 0.16
HMGB3O15347 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC16.02■□□□□ 0.16
HMGB3O15347 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC16.02■□□□□ 0.16
HMGB3O15347 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
HMGB3O15347 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
HMGB3O15347 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC16.02■□□□□ 0.16
HMGB3O15347 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
HMGB3O15347 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HMGB3O15347 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HMGB3O15347 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
HMGB3O15347 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
HMGB3O15347 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
HMGB3O15347 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
HMGB3O15347 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
HMGB3O15347 AC011484.1-201ENST00000377652 1995 ntBASIC16.02■□□□□ 0.15
HMGB3O15347 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
HMGB3O15347 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC16.02■□□□□ 0.15
HMGB3O15347 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
HMGB3O15347 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
HMGB3O15347 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
HMGB3O15347 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
HMGB3O15347 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HMGB3O15347 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HMGB3O15347 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HMGB3O15347 OR6D1P-203ENST00000641209 4860 ntBASIC16.01■□□□□ 0.15
HMGB3O15347 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HMGB3O15347 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC16.01■□□□□ 0.15
HMGB3O15347 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HMGB3O15347 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HMGB3O15347 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
HMGB3O15347 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
HMGB3O15347 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC16.01■□□□□ 0.15
HMGB3O15347 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC16.01■□□□□ 0.15
HMGB3O15347 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HMGB3O15347 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HMGB3O15347 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC16.01■□□□□ 0.15
HMGB3O15347 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC16.01■□□□□ 0.15
HMGB3O15347 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms