Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC21.38■■□□□ 1.01
SOX1O00570 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC21.38■■□□□ 1.01
SOX1O00570 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SOX1O00570 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC21.38■■□□□ 1.01
SOX1O00570 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SOX1O00570 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SOX1O00570 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SOX1O00570 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SOX1O00570 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
SOX1O00570 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SOX1O00570 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
SOX1O00570 MFAP1P1-201ENST00000442257 1255 ntBASIC21.37■■□□□ 1.01
SOX1O00570 EMBP1-201ENST00000458200 901 ntBASIC21.37■■□□□ 1.01
SOX1O00570 AC008040.2-201ENST00000461049 708 ntBASIC21.37■■□□□ 1.01
SOX1O00570 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC21.37■■□□□ 1.01
SOX1O00570 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC21.37■■□□□ 1.01
SOX1O00570 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
SOX1O00570 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC21.37■■□□□ 1.01
SOX1O00570 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SOX1O00570 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
SOX1O00570 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC21.37■■□□□ 1.01
SOX1O00570 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SOX1O00570 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC21.36■■□□□ 1.01
SOX1O00570 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SOX1O00570 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SOX1O00570 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SOX1O00570 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SOX1O00570 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SOX1O00570 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC21.36■■□□□ 1.01
SOX1O00570 HLA-G-203ENST00000376818 1127 ntBASIC21.36■■□□□ 1.01
SOX1O00570 KRT18P13-201ENST00000400056 1290 ntBASIC21.36■■□□□ 1.01
SOX1O00570 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
SOX1O00570 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC21.36■■□□□ 1.01
SOX1O00570 CNP-204ENST00000472031 1019 ntTSL 2 BASIC21.36■■□□□ 1.01
SOX1O00570 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SOX1O00570 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC21.36■■□□□ 1.01
SOX1O00570 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC21.36■■□□□ 1.01
SOX1O00570 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC21.36■■□□□ 1.01
SOX1O00570 AC092329.2-201ENST00000598402 547 ntBASIC21.36■■□□□ 1.01
SOX1O00570 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SOX1O00570 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC21.36■■□□□ 1.01
SOX1O00570 HYMAI.1-201ENST00000620949 238 ntBASIC21.36■■□□□ 1.01
SOX1O00570 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
SOX1O00570 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
SOX1O00570 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC21.36■■□□□ 1.01
SOX1O00570 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
SOX1O00570 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC21.35■■□□□ 1.01
SOX1O00570 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC21.35■■□□□ 1.01
SOX1O00570 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC21.35■■□□□ 1.01
SOX1O00570 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC21.35■■□□□ 1.01
SOX1O00570 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SOX1O00570 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
SOX1O00570 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC21.35■■□□□ 1.01
SOX1O00570 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
SOX1O00570 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SOX1O00570 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SOX1O00570 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SOX1O00570 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SOX1O00570 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SOX1O00570 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
SOX1O00570 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SOX1O00570 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SOX1O00570 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC21.34■■□□□ 1.01
SOX1O00570 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SOX1O00570 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SOX1O00570 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SOX1O00570 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SOX1O00570 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
SOX1O00570 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SOX1O00570 RPP21-221ENST00000428040 594 ntTSL 2 BASIC21.34■■□□□ 1.01
SOX1O00570 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SOX1O00570 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC21.34■■□□□ 1.01
SOX1O00570 TBCB-205ENST00000585746 875 ntTSL 3 BASIC21.34■■□□□ 1.01
SOX1O00570 IFNL4P1-201ENST00000607083 540 ntBASIC21.34■■□□□ 1.01
SOX1O00570 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SOX1O00570 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SOX1O00570 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
SOX1O00570 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
SOX1O00570 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1.01
SOX1O00570 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC21.33■■□□□ 1.01
SOX1O00570 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SOX1O00570 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SOX1O00570 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
SOX1O00570 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SOX1O00570 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SOX1O00570 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SOX1O00570 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC21.33■■□□□ 1.01
SOX1O00570 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC21.33■■□□□ 1.01
SOX1O00570 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
SOX1O00570 AC079776.4-201ENST00000511039 504 ntBASIC21.33■■□□□ 1.01
SOX1O00570 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC21.33■■□□□ 1.01
SOX1O00570 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
SOX1O00570 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
SOX1O00570 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC21.33■■□□□ 1
SOX1O00570 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC21.33■■□□□ 1
SOX1O00570 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC21.33■■□□□ 1
SOX1O00570 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
SOX1O00570 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
SOX1O00570 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
SOX1O00570 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC21.32■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms