Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 DPP3P2-201ENST00000416030 1696 ntBASIC16.27■□□□□ 0.19
TRAV40A0A0B4J280 AL135905.2-201ENST00000584934 1404 ntBASIC16.27■□□□□ 0.19
TRAV40A0A0B4J280 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC16.27■□□□□ 0.19
TRAV40A0A0B4J280 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
TRAV40A0A0B4J280 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC16.26■□□□□ 0.19
TRAV40A0A0B4J280 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC16.26■□□□□ 0.19
TRAV40A0A0B4J280 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC16.26■□□□□ 0.19
TRAV40A0A0B4J280 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV40A0A0B4J280 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC16.26■□□□□ 0.19
TRAV40A0A0B4J280 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV40A0A0B4J280 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV40A0A0B4J280 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV40A0A0B4J280 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV40A0A0B4J280 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV40A0A0B4J280 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC16.26■□□□□ 0.19
TRAV40A0A0B4J280 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV40A0A0B4J280 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC16.26■□□□□ 0.19
TRAV40A0A0B4J280 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC16.26■□□□□ 0.19
TRAV40A0A0B4J280 PNN-205ENST00000556530 601 ntTSL 2 BASIC16.26■□□□□ 0.19
TRAV40A0A0B4J280 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
TRAV40A0A0B4J280 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV40A0A0B4J280 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC16.26■□□□□ 0.19
TRAV40A0A0B4J280 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC16.26■□□□□ 0.19
TRAV40A0A0B4J280 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV40A0A0B4J280 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC16.26■□□□□ 0.19
TRAV40A0A0B4J280 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
TRAV40A0A0B4J280 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV40A0A0B4J280 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC16.26■□□□□ 0.19
TRAV40A0A0B4J280 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC16.25■□□□□ 0.19
TRAV40A0A0B4J280 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV40A0A0B4J280 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV40A0A0B4J280 AC007225.1-201ENST00000566331 1836 ntBASIC16.25■□□□□ 0.19
TRAV40A0A0B4J280 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
TRAV40A0A0B4J280 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV40A0A0B4J280 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV40A0A0B4J280 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV40A0A0B4J280 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV40A0A0B4J280 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV40A0A0B4J280 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV40A0A0B4J280 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC16.25■□□□□ 0.19
TRAV40A0A0B4J280 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC16.25■□□□□ 0.19
TRAV40A0A0B4J280 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV40A0A0B4J280 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC16.25■□□□□ 0.19
TRAV40A0A0B4J280 RARRES2P10-201ENST00000564312 460 ntBASIC16.25■□□□□ 0.19
TRAV40A0A0B4J280 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC16.25■□□□□ 0.19
TRAV40A0A0B4J280 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC16.25■□□□□ 0.19
TRAV40A0A0B4J280 AP001412.1-201ENST00000608405 714 ntBASIC16.25■□□□□ 0.19
TRAV40A0A0B4J280 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV40A0A0B4J280 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV40A0A0B4J280 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV40A0A0B4J280 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV40A0A0B4J280 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV40A0A0B4J280 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV40A0A0B4J280 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC16.25■□□□□ 0.19
TRAV40A0A0B4J280 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV40A0A0B4J280 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC16.25■□□□□ 0.19
TRAV40A0A0B4J280 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV40A0A0B4J280 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC16.25■□□□□ 0.19
TRAV40A0A0B4J280 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC16.25■□□□□ 0.19
TRAV40A0A0B4J280 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC16.25■□□□□ 0.19
TRAV40A0A0B4J280 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV40A0A0B4J280 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV40A0A0B4J280 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
TRAV40A0A0B4J280 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV40A0A0B4J280 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV40A0A0B4J280 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV40A0A0B4J280 NBPF21P-201ENST00000425093 1451 ntBASIC16.24■□□□□ 0.19
TRAV40A0A0B4J280 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC16.24■□□□□ 0.19
TRAV40A0A0B4J280 H19-201ENST00000411754 1788 ntTSL 5 BASIC16.24■□□□□ 0.19
TRAV40A0A0B4J280 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV40A0A0B4J280 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV40A0A0B4J280 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC16.24■□□□□ 0.19
TRAV40A0A0B4J280 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV40A0A0B4J280 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV40A0A0B4J280 TSPY7P-201ENST00000431358 1114 ntBASIC16.24■□□□□ 0.19
TRAV40A0A0B4J280 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV40A0A0B4J280 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC16.24■□□□□ 0.19
TRAV40A0A0B4J280 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC16.24■□□□□ 0.19
TRAV40A0A0B4J280 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
TRAV40A0A0B4J280 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC16.24■□□□□ 0.19
TRAV40A0A0B4J280 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV40A0A0B4J280 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
TRAV40A0A0B4J280 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC16.24■□□□□ 0.19
TRAV40A0A0B4J280 AL049637.2-201ENST00000641778 930 ntBASIC16.24■□□□□ 0.19
TRAV40A0A0B4J280 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC16.24■□□□□ 0.19
TRAV40A0A0B4J280 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC16.24■□□□□ 0.19
TRAV40A0A0B4J280 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
TRAV40A0A0B4J280 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRAV40A0A0B4J280 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRAV40A0A0B4J280 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC16.23■□□□□ 0.19
TRAV40A0A0B4J280 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRAV40A0A0B4J280 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TRAV40A0A0B4J280 BID-203ENST00000399765 1879 ntTSL 2 BASIC16.23■□□□□ 0.19
TRAV40A0A0B4J280 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TRAV40A0A0B4J280 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC16.23■□□□□ 0.19
TRAV40A0A0B4J280 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
TRAV40A0A0B4J280 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TRAV40A0A0B4J280 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TRAV40A0A0B4J280 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC16.23■□□□□ 0.19
TRAV40A0A0B4J280 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms