Protein–RNA interactions for Protein: Q9Y5H9

PCDHA2, Protocadherin alpha-2, humanhuman

Predictions only

Length 948 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA2Q9Y5H9 MACF1-219ENST00000484793 834 ntTSL 2 BASIC29.27■■■□□ 2.28
PCDHA2Q9Y5H9 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC29.27■■■□□ 2.28
PCDHA2Q9Y5H9 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
PCDHA2Q9Y5H9 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
PCDHA2Q9Y5H9 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC29.26■■■□□ 2.27
PCDHA2Q9Y5H9 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
PCDHA2Q9Y5H9 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC29.26■■■□□ 2.27
PCDHA2Q9Y5H9 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
PCDHA2Q9Y5H9 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC29.25■■■□□ 2.27
PCDHA2Q9Y5H9 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
PCDHA2Q9Y5H9 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC29.25■■■□□ 2.27
PCDHA2Q9Y5H9 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
PCDHA2Q9Y5H9 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
PCDHA2Q9Y5H9 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC29.24■■■□□ 2.27
PCDHA2Q9Y5H9 LINC01971-201ENST00000617888 1048 ntBASIC29.24■■■□□ 2.27
PCDHA2Q9Y5H9 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
PCDHA2Q9Y5H9 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC29.23■■■□□ 2.27
PCDHA2Q9Y5H9 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC29.23■■■□□ 2.27
PCDHA2Q9Y5H9 RNF166-209ENST00000567844 633 ntTSL 5 BASIC29.22■■■□□ 2.27
PCDHA2Q9Y5H9 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC29.22■■■□□ 2.27
PCDHA2Q9Y5H9 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC29.21■■■□□ 2.27
PCDHA2Q9Y5H9 RPS2-202ENST00000526522 924 ntTSL 2 BASIC29.21■■■□□ 2.27
PCDHA2Q9Y5H9 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC29.21■■■□□ 2.27
PCDHA2Q9Y5H9 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
PCDHA2Q9Y5H9 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.26
PCDHA2Q9Y5H9 AC010864.1-201ENST00000609407 1511 ntBASIC29.2■■■□□ 2.26
PCDHA2Q9Y5H9 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC29.19■■■□□ 2.26
PCDHA2Q9Y5H9 DUX4L11-201ENST00000611504 1267 ntBASIC29.19■■■□□ 2.26
PCDHA2Q9Y5H9 DUX4L12-201ENST00000614593 1267 ntBASIC29.19■■■□□ 2.26
PCDHA2Q9Y5H9 DUX4L14-201ENST00000621227 1267 ntBASIC29.19■■■□□ 2.26
PCDHA2Q9Y5H9 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC29.19■■■□□ 2.26
PCDHA2Q9Y5H9 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC29.18■■■□□ 2.26
PCDHA2Q9Y5H9 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
PCDHA2Q9Y5H9 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC29.18■■■□□ 2.26
PCDHA2Q9Y5H9 MIR3648-2-201ENST00000581792 180 ntBASIC29.18■■■□□ 2.26
PCDHA2Q9Y5H9 MIR3648-1-201ENST00000615959 180 ntBASIC29.18■■■□□ 2.26
PCDHA2Q9Y5H9 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC29.18■■■□□ 2.26
PCDHA2Q9Y5H9 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
PCDHA2Q9Y5H9 EI24-212ENST00000615917 1407 ntTSL 2 BASIC29.17■■■□□ 2.26
PCDHA2Q9Y5H9 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
PCDHA2Q9Y5H9 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
PCDHA2Q9Y5H9 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
PCDHA2Q9Y5H9 MIR639-201ENST00000384974 98 ntBASIC29.16■■■□□ 2.26
PCDHA2Q9Y5H9 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC29.16■■■□□ 2.26
PCDHA2Q9Y5H9 GDI1-215ENST00000630693 786 ntTSL 4 BASIC29.15■■■□□ 2.26
PCDHA2Q9Y5H9 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC29.15■■■□□ 2.26
PCDHA2Q9Y5H9 ABCB10P3-201ENST00000561950 2166 ntBASIC29.15■■■□□ 2.26
PCDHA2Q9Y5H9 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC29.14■■■□□ 2.26
PCDHA2Q9Y5H9 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC29.13■■■□□ 2.25
PCDHA2Q9Y5H9 AGPS-202ENST00000409888 815 ntTSL 4 BASIC29.13■■■□□ 2.25
PCDHA2Q9Y5H9 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC29.13■■■□□ 2.25
PCDHA2Q9Y5H9 AC016575.1-201ENST00000607026 382 ntBASIC29.13■■■□□ 2.25
PCDHA2Q9Y5H9 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC29.12■■■□□ 2.25
PCDHA2Q9Y5H9 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC29.12■■■□□ 2.25
PCDHA2Q9Y5H9 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC29.1■■■□□ 2.25
PCDHA2Q9Y5H9 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC29.1■■■□□ 2.25
PCDHA2Q9Y5H9 MIR4449-201ENST00000578365 66 ntBASIC29.1■■■□□ 2.25
PCDHA2Q9Y5H9 CR559946.2-201ENST00000623684 991 ntBASIC29.1■■■□□ 2.25
PCDHA2Q9Y5H9 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
PCDHA2Q9Y5H9 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC29.09■■■□□ 2.25
PCDHA2Q9Y5H9 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC29.09■■■□□ 2.25
PCDHA2Q9Y5H9 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC29.09■■■□□ 2.25
PCDHA2Q9Y5H9 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC29.08■■■□□ 2.25
PCDHA2Q9Y5H9 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC29.08■■■□□ 2.25
PCDHA2Q9Y5H9 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
PCDHA2Q9Y5H9 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC29.07■■■□□ 2.24
PCDHA2Q9Y5H9 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
PCDHA2Q9Y5H9 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC29.06■■■□□ 2.24
PCDHA2Q9Y5H9 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
PCDHA2Q9Y5H9 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
PCDHA2Q9Y5H9 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC29.06■■■□□ 2.24
PCDHA2Q9Y5H9 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
PCDHA2Q9Y5H9 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
PCDHA2Q9Y5H9 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
PCDHA2Q9Y5H9 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
PCDHA2Q9Y5H9 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
PCDHA2Q9Y5H9 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC29.04■■■□□ 2.24
PCDHA2Q9Y5H9 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
PCDHA2Q9Y5H9 CALM3-209ENST00000597743 577 ntTSL 4 BASIC29.04■■■□□ 2.24
PCDHA2Q9Y5H9 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC29.04■■■□□ 2.24
PCDHA2Q9Y5H9 AC139426.1-201ENST00000568218 2529 ntBASIC29.03■■■□□ 2.24
PCDHA2Q9Y5H9 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC29.03■■■□□ 2.24
PCDHA2Q9Y5H9 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC29.02■■■□□ 2.24
PCDHA2Q9Y5H9 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.24
PCDHA2Q9Y5H9 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC29.01■■■□□ 2.23
PCDHA2Q9Y5H9 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
PCDHA2Q9Y5H9 DUX4L13-201ENST00000554103 1267 ntBASIC29■■■□□ 2.23
PCDHA2Q9Y5H9 DUX4L15-201ENST00000611059 1267 ntBASIC29■■■□□ 2.23
PCDHA2Q9Y5H9 DUX4L23-201ENST00000615195 1269 ntBASIC29■■■□□ 2.23
PCDHA2Q9Y5H9 DUX4L24-201ENST00000617576 1269 ntBASIC29■■■□□ 2.23
PCDHA2Q9Y5H9 DUX4L22-201ENST00000618238 1269 ntBASIC29■■■□□ 2.23
PCDHA2Q9Y5H9 DUX4L20-201ENST00000619712 1269 ntBASIC29■■■□□ 2.23
PCDHA2Q9Y5H9 DUX4L21-201ENST00000622058 1269 ntBASIC29■■■□□ 2.23
PCDHA2Q9Y5H9 DUX4L10-201ENST00000622460 1267 ntBASIC29■■■□□ 2.23
PCDHA2Q9Y5H9 DUX4L25-201ENST00000624915 1269 ntBASIC29■■■□□ 2.23
PCDHA2Q9Y5H9 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC29■■■□□ 2.23
PCDHA2Q9Y5H9 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
PCDHA2Q9Y5H9 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC28.99■■■□□ 2.23
PCDHA2Q9Y5H9 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC28.99■■■□□ 2.23
PCDHA2Q9Y5H9 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC28.99■■■□□ 2.23
Retrieved 100 of 98,524 protein–RNA pairs in 13.1 ms