Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 AC127502.1-201ENST00000399971 1502 ntBASIC27.01■■□□□ 1.91
DDX56Q9NY93 DRD5P2-201ENST00000421395 2012 ntBASIC27.01■■□□□ 1.91
DDX56Q9NY93 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
DDX56Q9NY93 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC27.01■■□□□ 1.91
DDX56Q9NY93 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC27■■□□□ 1.91
DDX56Q9NY93 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC27■■□□□ 1.91
DDX56Q9NY93 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC27■■□□□ 1.91
DDX56Q9NY93 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC27■■□□□ 1.91
DDX56Q9NY93 SUZ12P1-203ENST00000578195 985 ntBASIC27■■□□□ 1.91
DDX56Q9NY93 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC27■■□□□ 1.91
DDX56Q9NY93 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
DDX56Q9NY93 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
DDX56Q9NY93 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC26.99■■□□□ 1.91
DDX56Q9NY93 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC26.99■■□□□ 1.91
DDX56Q9NY93 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
DDX56Q9NY93 RPS2-209ENST00000529806 993 ntTSL 3 BASIC26.98■■□□□ 1.91
DDX56Q9NY93 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC26.97■■□□□ 1.91
DDX56Q9NY93 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC26.96■■□□□ 1.91
DDX56Q9NY93 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC26.96■■□□□ 1.91
DDX56Q9NY93 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
DDX56Q9NY93 HNRNPLP2-201ENST00000568980 1570 ntBASIC26.95■■□□□ 1.9
DDX56Q9NY93 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC26.95■■□□□ 1.9
DDX56Q9NY93 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC26.94■■□□□ 1.9
DDX56Q9NY93 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC26.94■■□□□ 1.9
DDX56Q9NY93 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC26.94■■□□□ 1.9
DDX56Q9NY93 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC26.94■■□□□ 1.9
DDX56Q9NY93 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC26.94■■□□□ 1.9
DDX56Q9NY93 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC26.93■■□□□ 1.9
DDX56Q9NY93 AC005559.1-201ENST00000589661 871 ntBASIC26.93■■□□□ 1.9
DDX56Q9NY93 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC26.93■■□□□ 1.9
DDX56Q9NY93 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC26.92■■□□□ 1.9
DDX56Q9NY93 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC26.9■■□□□ 1.9
DDX56Q9NY93 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
DDX56Q9NY93 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
DDX56Q9NY93 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC26.9■■□□□ 1.9
DDX56Q9NY93 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
DDX56Q9NY93 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
DDX56Q9NY93 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
DDX56Q9NY93 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
DDX56Q9NY93 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
DDX56Q9NY93 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC26.89■■□□□ 1.9
DDX56Q9NY93 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC26.89■■□□□ 1.89
DDX56Q9NY93 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC26.89■■□□□ 1.89
DDX56Q9NY93 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
DDX56Q9NY93 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC26.88■■□□□ 1.89
DDX56Q9NY93 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC26.88■■□□□ 1.89
DDX56Q9NY93 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC26.88■■□□□ 1.89
DDX56Q9NY93 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
DDX56Q9NY93 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
DDX56Q9NY93 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
DDX56Q9NY93 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
DDX56Q9NY93 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC26.86■■□□□ 1.89
DDX56Q9NY93 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC26.86■■□□□ 1.89
DDX56Q9NY93 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC26.85■■□□□ 1.89
DDX56Q9NY93 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC26.85■■□□□ 1.89
DDX56Q9NY93 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
DDX56Q9NY93 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
DDX56Q9NY93 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC26.84■■□□□ 1.89
DDX56Q9NY93 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
DDX56Q9NY93 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
DDX56Q9NY93 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
DDX56Q9NY93 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC26.83■■□□□ 1.89
DDX56Q9NY93 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
DDX56Q9NY93 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC26.83■■□□□ 1.88
DDX56Q9NY93 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.88
DDX56Q9NY93 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
DDX56Q9NY93 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC26.82■■□□□ 1.88
DDX56Q9NY93 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
DDX56Q9NY93 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC26.81■■□□□ 1.88
DDX56Q9NY93 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC26.81■■□□□ 1.88
DDX56Q9NY93 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
DDX56Q9NY93 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC26.8■■□□□ 1.88
DDX56Q9NY93 PROC-203ENST00000409048 1586 ntTSL 5 BASIC26.8■■□□□ 1.88
DDX56Q9NY93 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
DDX56Q9NY93 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
DDX56Q9NY93 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC26.8■■□□□ 1.88
DDX56Q9NY93 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC26.8■■□□□ 1.88
DDX56Q9NY93 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
DDX56Q9NY93 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
DDX56Q9NY93 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC26.79■■□□□ 1.88
DDX56Q9NY93 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
DDX56Q9NY93 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC26.78■■□□□ 1.88
DDX56Q9NY93 AC108673.1-201ENST00000510422 1159 ntBASIC26.78■■□□□ 1.88
DDX56Q9NY93 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC26.78■■□□□ 1.88
DDX56Q9NY93 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
DDX56Q9NY93 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC26.77■■□□□ 1.88
DDX56Q9NY93 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC26.77■■□□□ 1.88
DDX56Q9NY93 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC26.76■■□□□ 1.87
DDX56Q9NY93 DUX4L28-201ENST00000623687 678 ntBASIC26.76■■□□□ 1.87
DDX56Q9NY93 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC26.76■■□□□ 1.87
DDX56Q9NY93 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC26.76■■□□□ 1.87
DDX56Q9NY93 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
DDX56Q9NY93 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC26.75■■□□□ 1.87
DDX56Q9NY93 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC26.75■■□□□ 1.87
DDX56Q9NY93 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
DDX56Q9NY93 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC26.74■■□□□ 1.87
DDX56Q9NY93 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC26.74■■□□□ 1.87
DDX56Q9NY93 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC26.74■■□□□ 1.87
DDX56Q9NY93 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
DDX56Q9NY93 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms