Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC21.74■■□□□ 1.07
CSPG4Q6UVK1 CHST11-202ENST00000546689 756 ntTSL 2 BASIC21.74■■□□□ 1.07
CSPG4Q6UVK1 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CSPG4Q6UVK1 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
CSPG4Q6UVK1 CEP120-209ENST00000515110 606 ntTSL 3 BASIC21.73■■□□□ 1.07
CSPG4Q6UVK1 AC012354.3-201ENST00000623734 483 ntBASIC21.73■■□□□ 1.07
CSPG4Q6UVK1 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CSPG4Q6UVK1 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CSPG4Q6UVK1 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CSPG4Q6UVK1 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CSPG4Q6UVK1 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC21.71■■□□□ 1.07
CSPG4Q6UVK1 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CSPG4Q6UVK1 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC21.71■■□□□ 1.07
CSPG4Q6UVK1 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CSPG4Q6UVK1 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
CSPG4Q6UVK1 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
CSPG4Q6UVK1 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CSPG4Q6UVK1 AC019069.1-201ENST00000610008 1333 ntBASIC21.7■■□□□ 1.06
CSPG4Q6UVK1 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CSPG4Q6UVK1 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC21.69■■□□□ 1.06
CSPG4Q6UVK1 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
CSPG4Q6UVK1 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC21.69■■□□□ 1.06
CSPG4Q6UVK1 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CSPG4Q6UVK1 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC21.68■■□□□ 1.06
CSPG4Q6UVK1 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC21.68■■□□□ 1.06
CSPG4Q6UVK1 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
CSPG4Q6UVK1 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC21.68■■□□□ 1.06
CSPG4Q6UVK1 AC018358.1-201ENST00000631079 1402 ntBASIC21.68■■□□□ 1.06
CSPG4Q6UVK1 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CSPG4Q6UVK1 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
CSPG4Q6UVK1 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
CSPG4Q6UVK1 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
CSPG4Q6UVK1 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
CSPG4Q6UVK1 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC21.63■■□□□ 1.05
CSPG4Q6UVK1 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
CSPG4Q6UVK1 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CSPG4Q6UVK1 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CSPG4Q6UVK1 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC21.62■■□□□ 1.05
CSPG4Q6UVK1 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC21.62■■□□□ 1.05
CSPG4Q6UVK1 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
CSPG4Q6UVK1 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CSPG4Q6UVK1 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CSPG4Q6UVK1 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CSPG4Q6UVK1 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CSPG4Q6UVK1 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CSPG4Q6UVK1 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CSPG4Q6UVK1 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CSPG4Q6UVK1 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC21.59■■□□□ 1.05
CSPG4Q6UVK1 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CSPG4Q6UVK1 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
CSPG4Q6UVK1 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.04
CSPG4Q6UVK1 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CSPG4Q6UVK1 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC21.57■■□□□ 1.04
CSPG4Q6UVK1 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CSPG4Q6UVK1 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC21.57■■□□□ 1.04
CSPG4Q6UVK1 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC21.57■■□□□ 1.04
CSPG4Q6UVK1 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CSPG4Q6UVK1 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CSPG4Q6UVK1 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CSPG4Q6UVK1 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CSPG4Q6UVK1 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC21.56■■□□□ 1.04
CSPG4Q6UVK1 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC21.56■■□□□ 1.04
CSPG4Q6UVK1 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
CSPG4Q6UVK1 AL033527.3-201ENST00000566366 1196 ntBASIC21.56■■□□□ 1.04
CSPG4Q6UVK1 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CSPG4Q6UVK1 AC022413.1-201ENST00000624602 984 ntBASIC21.56■■□□□ 1.04
CSPG4Q6UVK1 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
CSPG4Q6UVK1 LINC00273-201ENST00000539813 1452 ntBASIC21.55■■□□□ 1.04
CSPG4Q6UVK1 HES4-202ENST00000428771 1040 ntTSL 2 BASIC21.55■■□□□ 1.04
CSPG4Q6UVK1 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC21.55■■□□□ 1.04
CSPG4Q6UVK1 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CSPG4Q6UVK1 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
CSPG4Q6UVK1 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
CSPG4Q6UVK1 AC008813.1-201ENST00000536597 885 ntBASIC21.54■■□□□ 1.04
CSPG4Q6UVK1 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC21.54■■□□□ 1.04
CSPG4Q6UVK1 TSPY13P-201ENST00000338964 914 ntBASIC21.54■■□□□ 1.04
CSPG4Q6UVK1 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CSPG4Q6UVK1 AL592295.1-201ENST00000400984 884 ntBASIC21.54■■□□□ 1.04
CSPG4Q6UVK1 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CSPG4Q6UVK1 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC21.52■■□□□ 1.03
CSPG4Q6UVK1 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CSPG4Q6UVK1 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CSPG4Q6UVK1 RARRES2P1-201ENST00000474487 481 ntBASIC21.51■■□□□ 1.03
CSPG4Q6UVK1 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC21.5■■□□□ 1.03
CSPG4Q6UVK1 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CSPG4Q6UVK1 HYI-213ENST00000583037 1322 ntTSL 5 BASIC21.5■■□□□ 1.03
CSPG4Q6UVK1 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CSPG4Q6UVK1 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CSPG4Q6UVK1 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC21.47■■□□□ 1.03
CSPG4Q6UVK1 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
CSPG4Q6UVK1 KRT18P60-201ENST00000312876 1297 ntBASIC21.47■■□□□ 1.03
CSPG4Q6UVK1 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC21.47■■□□□ 1.03
CSPG4Q6UVK1 AC120057.4-201ENST00000624722 1615 ntBASIC21.47■■□□□ 1.03
CSPG4Q6UVK1 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CSPG4Q6UVK1 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC21.46■■□□□ 1.03
CSPG4Q6UVK1 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC21.46■■□□□ 1.03
CSPG4Q6UVK1 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC21.45■■□□□ 1.02
CSPG4Q6UVK1 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CSPG4Q6UVK1 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CSPG4Q6UVK1 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC21.45■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms