Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 PVT1-219ENST00000523427 938 ntTSL 3 BASIC27.97■■■□□ 2.07
SCN1AP35498 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC27.97■■■□□ 2.07
SCN1AP35498 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC27.97■■■□□ 2.07
SCN1AP35498 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
SCN1AP35498 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC27.95■■■□□ 2.06
SCN1AP35498 ABCB10P1-201ENST00000614297 2181 ntBASIC27.95■■■□□ 2.06
SCN1AP35498 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC27.94■■■□□ 2.06
SCN1AP35498 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
SCN1AP35498 HLA-V-202ENST00000446817 847 ntBASIC27.93■■■□□ 2.06
SCN1AP35498 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC27.93■■■□□ 2.06
SCN1AP35498 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
SCN1AP35498 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
SCN1AP35498 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC27.92■■■□□ 2.06
SCN1AP35498 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC27.91■■■□□ 2.06
SCN1AP35498 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
SCN1AP35498 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC27.91■■■□□ 2.06
SCN1AP35498 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
SCN1AP35498 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC27.89■■■□□ 2.06
SCN1AP35498 AC127502.1-201ENST00000399971 1502 ntBASIC27.89■■■□□ 2.06
SCN1AP35498 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC27.89■■■□□ 2.05
SCN1AP35498 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC27.88■■■□□ 2.05
SCN1AP35498 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC27.88■■■□□ 2.05
SCN1AP35498 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC27.87■■■□□ 2.05
SCN1AP35498 RPS2-202ENST00000526522 924 ntTSL 2 BASIC27.87■■■□□ 2.05
SCN1AP35498 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC27.87■■■□□ 2.05
SCN1AP35498 CALM3-209ENST00000597743 577 ntTSL 4 BASIC27.87■■■□□ 2.05
SCN1AP35498 LINC01971-201ENST00000617888 1048 ntBASIC27.87■■■□□ 2.05
SCN1AP35498 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
SCN1AP35498 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
SCN1AP35498 AC135983.2-203ENST00000454486 1613 ntBASIC27.86■■■□□ 2.05
SCN1AP35498 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
SCN1AP35498 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC27.86■■■□□ 2.05
SCN1AP35498 CR559946.2-201ENST00000623684 991 ntBASIC27.85■■■□□ 2.05
SCN1AP35498 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC27.85■■■□□ 2.05
SCN1AP35498 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC27.84■■■□□ 2.05
SCN1AP35498 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC27.84■■■□□ 2.05
SCN1AP35498 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC27.83■■■□□ 2.05
SCN1AP35498 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC27.83■■■□□ 2.05
SCN1AP35498 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC27.82■■■□□ 2.04
SCN1AP35498 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC27.82■■■□□ 2.04
SCN1AP35498 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC27.82■■■□□ 2.04
SCN1AP35498 DUX4L11-201ENST00000611504 1267 ntBASIC27.82■■■□□ 2.04
SCN1AP35498 DUX4L12-201ENST00000614593 1267 ntBASIC27.82■■■□□ 2.04
SCN1AP35498 DUX4L14-201ENST00000621227 1267 ntBASIC27.82■■■□□ 2.04
SCN1AP35498 GDI1-215ENST00000630693 786 ntTSL 4 BASIC27.82■■■□□ 2.04
SCN1AP35498 MIR3648-2-201ENST00000581792 180 ntBASIC27.81■■■□□ 2.04
SCN1AP35498 MIR3648-1-201ENST00000615959 180 ntBASIC27.81■■■□□ 2.04
SCN1AP35498 WHAMMP2-203ENST00000563942 1603 ntBASIC27.81■■■□□ 2.04
SCN1AP35498 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC27.8■■■□□ 2.04
SCN1AP35498 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC27.8■■■□□ 2.04
SCN1AP35498 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
SCN1AP35498 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC27.8■■■□□ 2.04
SCN1AP35498 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC27.79■■■□□ 2.04
SCN1AP35498 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC27.79■■■□□ 2.04
SCN1AP35498 AGPS-202ENST00000409888 815 ntTSL 4 BASIC27.79■■■□□ 2.04
SCN1AP35498 RNF166-209ENST00000567844 633 ntTSL 5 BASIC27.79■■■□□ 2.04
SCN1AP35498 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC27.79■■■□□ 2.04
SCN1AP35498 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC27.79■■■□□ 2.04
SCN1AP35498 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
SCN1AP35498 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC27.78■■■□□ 2.04
SCN1AP35498 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC27.77■■■□□ 2.04
SCN1AP35498 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC27.77■■■□□ 2.04
SCN1AP35498 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
SCN1AP35498 MACF1-219ENST00000484793 834 ntTSL 2 BASIC27.77■■■□□ 2.04
SCN1AP35498 AC016575.1-201ENST00000607026 382 ntBASIC27.77■■■□□ 2.04
SCN1AP35498 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC27.76■■■□□ 2.03
SCN1AP35498 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC27.75■■■□□ 2.03
SCN1AP35498 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC27.75■■■□□ 2.03
SCN1AP35498 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
SCN1AP35498 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC27.75■■■□□ 2.03
SCN1AP35498 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC27.75■■■□□ 2.03
SCN1AP35498 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
SCN1AP35498 DUX4L13-201ENST00000554103 1267 ntBASIC27.74■■■□□ 2.03
SCN1AP35498 DUX4L15-201ENST00000611059 1267 ntBASIC27.74■■■□□ 2.03
SCN1AP35498 DUX4L23-201ENST00000615195 1269 ntBASIC27.74■■■□□ 2.03
SCN1AP35498 DUX4L24-201ENST00000617576 1269 ntBASIC27.74■■■□□ 2.03
SCN1AP35498 DUX4L22-201ENST00000618238 1269 ntBASIC27.74■■■□□ 2.03
SCN1AP35498 DUX4L20-201ENST00000619712 1269 ntBASIC27.74■■■□□ 2.03
SCN1AP35498 DUX4L21-201ENST00000622058 1269 ntBASIC27.74■■■□□ 2.03
SCN1AP35498 DUX4L10-201ENST00000622460 1267 ntBASIC27.74■■■□□ 2.03
SCN1AP35498 DUX4L25-201ENST00000624915 1269 ntBASIC27.74■■■□□ 2.03
SCN1AP35498 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC27.73■■■□□ 2.03
SCN1AP35498 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC27.73■■■□□ 2.03
SCN1AP35498 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
SCN1AP35498 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC27.72■■■□□ 2.03
SCN1AP35498 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC27.72■■■□□ 2.03
SCN1AP35498 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
SCN1AP35498 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
SCN1AP35498 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
SCN1AP35498 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
SCN1AP35498 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC27.71■■■□□ 2.03
SCN1AP35498 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
SCN1AP35498 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC27.71■■■□□ 2.03
SCN1AP35498 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC27.7■■■□□ 2.02
SCN1AP35498 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC27.7■■■□□ 2.02
SCN1AP35498 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC27.7■■■□□ 2.02
SCN1AP35498 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC27.7■■■□□ 2.02
SCN1AP35498 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC27.69■■■□□ 2.02
SCN1AP35498 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC27.69■■■□□ 2.02
SCN1AP35498 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC27.69■■■□□ 2.02
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms