Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 CALM3-209ENST00000597743 577 ntTSL 4 BASIC34.89■■■■□ 3.18
COL3A1P02461 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC34.88■■■■□ 3.17
COL3A1P02461 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC34.88■■■■□ 3.17
COL3A1P02461 LINC01971-201ENST00000617888 1048 ntBASIC34.87■■■■□ 3.17
COL3A1P02461 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC34.86■■■■□ 3.17
COL3A1P02461 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC34.85■■■■□ 3.17
COL3A1P02461 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC34.85■■■■□ 3.17
COL3A1P02461 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC34.85■■■■□ 3.17
COL3A1P02461 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC34.83■■■■□ 3.17
COL3A1P02461 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC34.83■■■■□ 3.17
COL3A1P02461 PVT1-219ENST00000523427 938 ntTSL 3 BASIC34.83■■■■□ 3.17
COL3A1P02461 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC34.82■■■■□ 3.16
COL3A1P02461 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC34.82■■■■□ 3.16
COL3A1P02461 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC34.8■■■■□ 3.16
COL3A1P02461 CR559946.2-201ENST00000623684 991 ntBASIC34.8■■■■□ 3.16
COL3A1P02461 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC34.8■■■■□ 3.16
COL3A1P02461 MACF1-219ENST00000484793 834 ntTSL 2 BASIC34.79■■■■□ 3.16
COL3A1P02461 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC34.79■■■■□ 3.16
COL3A1P02461 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC34.78■■■■□ 3.16
COL3A1P02461 DUX4L11-201ENST00000611504 1267 ntBASIC34.77■■■■□ 3.16
COL3A1P02461 DUX4L12-201ENST00000614593 1267 ntBASIC34.77■■■■□ 3.16
COL3A1P02461 DUX4L14-201ENST00000621227 1267 ntBASIC34.77■■■■□ 3.16
COL3A1P02461 RNF166-209ENST00000567844 633 ntTSL 5 BASIC34.76■■■■□ 3.15
COL3A1P02461 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC34.75■■■■□ 3.15
COL3A1P02461 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC34.75■■■■□ 3.15
COL3A1P02461 AC135983.2-203ENST00000454486 1613 ntBASIC34.75■■■■□ 3.15
COL3A1P02461 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC34.74■■■■□ 3.15
COL3A1P02461 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC34.74■■■■□ 3.15
COL3A1P02461 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC34.74■■■■□ 3.15
COL3A1P02461 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC34.73■■■■□ 3.15
COL3A1P02461 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC34.73■■■■□ 3.15
COL3A1P02461 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC34.73■■■■□ 3.15
COL3A1P02461 WHAMMP2-203ENST00000563942 1603 ntBASIC34.73■■■■□ 3.15
COL3A1P02461 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC34.72■■■■□ 3.15
COL3A1P02461 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC34.72■■■■□ 3.15
COL3A1P02461 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC34.72■■■■□ 3.15
COL3A1P02461 RPS2-202ENST00000526522 924 ntTSL 2 BASIC34.71■■■■□ 3.15
COL3A1P02461 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC34.71■■■■□ 3.15
COL3A1P02461 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC34.7■■■■□ 3.15
COL3A1P02461 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC34.7■■■■□ 3.15
COL3A1P02461 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC34.69■■■■□ 3.14
COL3A1P02461 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC34.69■■■■□ 3.14
COL3A1P02461 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC34.69■■■■□ 3.14
COL3A1P02461 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC34.68■■■■□ 3.14
COL3A1P02461 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC34.67■■■■□ 3.14
COL3A1P02461 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC34.67■■■■□ 3.14
COL3A1P02461 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC34.67■■■■□ 3.14
COL3A1P02461 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC34.66■■■■□ 3.14
COL3A1P02461 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC34.65■■■■□ 3.14
COL3A1P02461 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC34.64■■■■□ 3.14
COL3A1P02461 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC34.64■■■■□ 3.14
COL3A1P02461 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC34.64■■■■□ 3.14
COL3A1P02461 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC34.64■■■■□ 3.14
COL3A1P02461 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC34.64■■■■□ 3.14
COL3A1P02461 MIR3648-2-201ENST00000581792 180 ntBASIC34.64■■■■□ 3.14
COL3A1P02461 MIR3648-1-201ENST00000615959 180 ntBASIC34.64■■■■□ 3.14
COL3A1P02461 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC34.63■■■■□ 3.13
COL3A1P02461 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC34.63■■■■□ 3.13
COL3A1P02461 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC34.63■■■■□ 3.13
COL3A1P02461 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC34.63■■■■□ 3.13
COL3A1P02461 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC34.62■■■■□ 3.13
COL3A1P02461 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC34.62■■■■□ 3.13
COL3A1P02461 DUX4L13-201ENST00000554103 1267 ntBASIC34.62■■■■□ 3.13
COL3A1P02461 DUX4L15-201ENST00000611059 1267 ntBASIC34.62■■■■□ 3.13
COL3A1P02461 DUX4L23-201ENST00000615195 1269 ntBASIC34.62■■■■□ 3.13
COL3A1P02461 DUX4L24-201ENST00000617576 1269 ntBASIC34.62■■■■□ 3.13
COL3A1P02461 DUX4L22-201ENST00000618238 1269 ntBASIC34.62■■■■□ 3.13
COL3A1P02461 DUX4L20-201ENST00000619712 1269 ntBASIC34.62■■■■□ 3.13
COL3A1P02461 DUX4L21-201ENST00000622058 1269 ntBASIC34.62■■■■□ 3.13
COL3A1P02461 DUX4L10-201ENST00000622460 1267 ntBASIC34.62■■■■□ 3.13
COL3A1P02461 DUX4L25-201ENST00000624915 1269 ntBASIC34.62■■■■□ 3.13
COL3A1P02461 GDI1-215ENST00000630693 786 ntTSL 4 BASIC34.62■■■■□ 3.13
COL3A1P02461 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC34.62■■■■□ 3.13
COL3A1P02461 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC34.61■■■■□ 3.13
COL3A1P02461 ABCB10P1-201ENST00000614297 2181 ntBASIC34.61■■■■□ 3.13
COL3A1P02461 HLA-V-202ENST00000446817 847 ntBASIC34.6■■■■□ 3.13
COL3A1P02461 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC34.6■■■■□ 3.13
COL3A1P02461 MBP-237ENST00000579129 1052 ntTSL 5 BASIC34.59■■■■□ 3.13
COL3A1P02461 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC34.59■■■■□ 3.13
COL3A1P02461 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC34.59■■■■□ 3.13
COL3A1P02461 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC34.59■■■■□ 3.13
COL3A1P02461 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC34.59■■■■□ 3.13
COL3A1P02461 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC34.59■■■■□ 3.13
COL3A1P02461 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC34.58■■■■□ 3.13
COL3A1P02461 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC34.58■■■■□ 3.13
COL3A1P02461 AC016575.1-201ENST00000607026 382 ntBASIC34.58■■■■□ 3.13
COL3A1P02461 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC34.57■■■■□ 3.13
COL3A1P02461 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC34.57■■■■□ 3.12
COL3A1P02461 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC34.57■■■■□ 3.12
COL3A1P02461 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC34.57■■■■□ 3.12
COL3A1P02461 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC34.57■■■■□ 3.12
COL3A1P02461 CHML-204ENST00000638121 920 ntTSL 2 BASIC34.57■■■■□ 3.12
COL3A1P02461 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC34.56■■■■□ 3.12
COL3A1P02461 AGPS-202ENST00000409888 815 ntTSL 4 BASIC34.56■■■■□ 3.12
COL3A1P02461 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC34.56■■■■□ 3.12
COL3A1P02461 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC34.56■■■■□ 3.12
COL3A1P02461 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC34.56■■■■□ 3.12
COL3A1P02461 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC34.55■■■■□ 3.12
COL3A1P02461 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC34.54■■■■□ 3.12
COL3A1P02461 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC34.53■■■■□ 3.12
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms