Protein–RNA interactions for Protein: A6NFN3

RBFOX3, RNA binding protein fox-1 homolog 3, humanhuman

Predictions only

Length 312 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RBFOX3A6NFN3 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC20.52■□□□□ 0.88
RBFOX3A6NFN3 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
RBFOX3A6NFN3 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RBFOX3A6NFN3 AC015813.7-201ENST00000623294 581 ntBASIC20.52■□□□□ 0.88
RBFOX3A6NFN3 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RBFOX3A6NFN3 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RBFOX3A6NFN3 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
RBFOX3A6NFN3 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
RBFOX3A6NFN3 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RBFOX3A6NFN3 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
RBFOX3A6NFN3 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
RBFOX3A6NFN3 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC20.5■□□□□ 0.87
RBFOX3A6NFN3 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
RBFOX3A6NFN3 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC20.5■□□□□ 0.87
RBFOX3A6NFN3 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RBFOX3A6NFN3 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC20.49■□□□□ 0.87
RBFOX3A6NFN3 BX255925.1-201ENST00000566954 1854 ntBASIC20.49■□□□□ 0.87
RBFOX3A6NFN3 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RBFOX3A6NFN3 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RBFOX3A6NFN3 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
RBFOX3A6NFN3 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RBFOX3A6NFN3 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RBFOX3A6NFN3 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RBFOX3A6NFN3 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
RBFOX3A6NFN3 SHF-208ENST00000560734 1731 ntTSL 3 BASIC20.47■□□□□ 0.87
RBFOX3A6NFN3 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
RBFOX3A6NFN3 SNAI3-AS1-204ENST00000567997 2048 ntBASIC20.46■□□□□ 0.87
RBFOX3A6NFN3 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC20.46■□□□□ 0.87
RBFOX3A6NFN3 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RBFOX3A6NFN3 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC20.46■□□□□ 0.87
RBFOX3A6NFN3 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RBFOX3A6NFN3 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
RBFOX3A6NFN3 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RBFOX3A6NFN3 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
RBFOX3A6NFN3 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
RBFOX3A6NFN3 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RBFOX3A6NFN3 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RBFOX3A6NFN3 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC20.42■□□□□ 0.86
RBFOX3A6NFN3 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
RBFOX3A6NFN3 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RBFOX3A6NFN3 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
RBFOX3A6NFN3 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
RBFOX3A6NFN3 MVK-208ENST00000539696 608 ntTSL 5 BASIC20.41■□□□□ 0.86
RBFOX3A6NFN3 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
RBFOX3A6NFN3 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC20.41■□□□□ 0.86
RBFOX3A6NFN3 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
RBFOX3A6NFN3 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC20.4■□□□□ 0.86
RBFOX3A6NFN3 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC20.39■□□□□ 0.86
RBFOX3A6NFN3 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC20.39■□□□□ 0.86
RBFOX3A6NFN3 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC20.39■□□□□ 0.86
RBFOX3A6NFN3 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC20.39■□□□□ 0.85
RBFOX3A6NFN3 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RBFOX3A6NFN3 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC20.38■□□□□ 0.85
RBFOX3A6NFN3 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC20.38■□□□□ 0.85
RBFOX3A6NFN3 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
RBFOX3A6NFN3 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RBFOX3A6NFN3 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
RBFOX3A6NFN3 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC20.37■□□□□ 0.85
RBFOX3A6NFN3 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
RBFOX3A6NFN3 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RBFOX3A6NFN3 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
RBFOX3A6NFN3 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RBFOX3A6NFN3 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
RBFOX3A6NFN3 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
RBFOX3A6NFN3 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC20.36■□□□□ 0.85
RBFOX3A6NFN3 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RBFOX3A6NFN3 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RBFOX3A6NFN3 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC20.35■□□□□ 0.85
RBFOX3A6NFN3 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
RBFOX3A6NFN3 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC20.35■□□□□ 0.85
RBFOX3A6NFN3 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RBFOX3A6NFN3 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RBFOX3A6NFN3 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC20.34■□□□□ 0.85
RBFOX3A6NFN3 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RBFOX3A6NFN3 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC20.33■□□□□ 0.85
RBFOX3A6NFN3 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
RBFOX3A6NFN3 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RBFOX3A6NFN3 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
RBFOX3A6NFN3 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC20.33■□□□□ 0.84
RBFOX3A6NFN3 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
RBFOX3A6NFN3 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC20.33■□□□□ 0.84
RBFOX3A6NFN3 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
RBFOX3A6NFN3 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
RBFOX3A6NFN3 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
RBFOX3A6NFN3 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
RBFOX3A6NFN3 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RBFOX3A6NFN3 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RBFOX3A6NFN3 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC20.31■□□□□ 0.84
RBFOX3A6NFN3 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC20.31■□□□□ 0.84
RBFOX3A6NFN3 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
RBFOX3A6NFN3 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RBFOX3A6NFN3 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RBFOX3A6NFN3 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
RBFOX3A6NFN3 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
RBFOX3A6NFN3 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC20.3■□□□□ 0.84
RBFOX3A6NFN3 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RBFOX3A6NFN3 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RBFOX3A6NFN3 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
RBFOX3A6NFN3 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
RBFOX3A6NFN3 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms