Protein–RNA interactions for Protein: A0A0B4J263

TRAV39, T-cell receptor alpha variable 39 (Fragment), humanhuman

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV39A0A0B4J263 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
TRAV39A0A0B4J263 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
TRAV39A0A0B4J263 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRAV39A0A0B4J263 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC21.65■■□□□ 1.06
TRAV39A0A0B4J263 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
TRAV39A0A0B4J263 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRAV39A0A0B4J263 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRAV39A0A0B4J263 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC21.64■■□□□ 1.06
TRAV39A0A0B4J263 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TRAV39A0A0B4J263 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC21.63■■□□□ 1.05
TRAV39A0A0B4J263 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRAV39A0A0B4J263 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
TRAV39A0A0B4J263 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
TRAV39A0A0B4J263 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRAV39A0A0B4J263 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
TRAV39A0A0B4J263 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC21.62■■□□□ 1.05
TRAV39A0A0B4J263 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC21.62■■□□□ 1.05
TRAV39A0A0B4J263 AC127502.1-201ENST00000399971 1502 ntBASIC21.61■■□□□ 1.05
TRAV39A0A0B4J263 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC21.61■■□□□ 1.05
TRAV39A0A0B4J263 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC21.61■■□□□ 1.05
TRAV39A0A0B4J263 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
TRAV39A0A0B4J263 CHML-205ENST00000638160 705 ntTSL 3 BASIC21.61■■□□□ 1.05
TRAV39A0A0B4J263 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC21.61■■□□□ 1.05
TRAV39A0A0B4J263 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TRAV39A0A0B4J263 DRD5P2-201ENST00000421395 2012 ntBASIC21.6■■□□□ 1.05
TRAV39A0A0B4J263 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TRAV39A0A0B4J263 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
TRAV39A0A0B4J263 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
TRAV39A0A0B4J263 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TRAV39A0A0B4J263 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TRAV39A0A0B4J263 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
TRAV39A0A0B4J263 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
TRAV39A0A0B4J263 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
TRAV39A0A0B4J263 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC21.58■■□□□ 1.05
TRAV39A0A0B4J263 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
TRAV39A0A0B4J263 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
TRAV39A0A0B4J263 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC21.58■■□□□ 1.05
TRAV39A0A0B4J263 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.05
TRAV39A0A0B4J263 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
TRAV39A0A0B4J263 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC21.57■■□□□ 1.04
TRAV39A0A0B4J263 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TRAV39A0A0B4J263 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TRAV39A0A0B4J263 AC142086.6-201ENST00000621154 1765 ntBASIC21.56■■□□□ 1.04
TRAV39A0A0B4J263 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC21.56■■□□□ 1.04
TRAV39A0A0B4J263 AC005559.1-201ENST00000589661 871 ntBASIC21.56■■□□□ 1.04
TRAV39A0A0B4J263 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC21.56■■□□□ 1.04
TRAV39A0A0B4J263 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
TRAV39A0A0B4J263 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
TRAV39A0A0B4J263 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
TRAV39A0A0B4J263 RPS2-209ENST00000529806 993 ntTSL 3 BASIC21.55■■□□□ 1.04
TRAV39A0A0B4J263 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
TRAV39A0A0B4J263 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TRAV39A0A0B4J263 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC21.55■■□□□ 1.04
TRAV39A0A0B4J263 HNRNPLP2-201ENST00000568980 1570 ntBASIC21.54■■□□□ 1.04
TRAV39A0A0B4J263 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TRAV39A0A0B4J263 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
TRAV39A0A0B4J263 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TRAV39A0A0B4J263 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TRAV39A0A0B4J263 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
TRAV39A0A0B4J263 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
TRAV39A0A0B4J263 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
TRAV39A0A0B4J263 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
TRAV39A0A0B4J263 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
TRAV39A0A0B4J263 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TRAV39A0A0B4J263 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
TRAV39A0A0B4J263 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC21.51■■□□□ 1.03
TRAV39A0A0B4J263 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC21.5■■□□□ 1.03
TRAV39A0A0B4J263 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
TRAV39A0A0B4J263 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC21.49■■□□□ 1.03
TRAV39A0A0B4J263 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC21.49■■□□□ 1.03
TRAV39A0A0B4J263 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC21.49■■□□□ 1.03
TRAV39A0A0B4J263 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
TRAV39A0A0B4J263 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
TRAV39A0A0B4J263 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
TRAV39A0A0B4J263 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
TRAV39A0A0B4J263 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC21.49■■□□□ 1.03
TRAV39A0A0B4J263 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC21.49■■□□□ 1.03
TRAV39A0A0B4J263 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC21.48■■□□□ 1.03
TRAV39A0A0B4J263 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
TRAV39A0A0B4J263 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TRAV39A0A0B4J263 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
TRAV39A0A0B4J263 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC21.47■■□□□ 1.03
TRAV39A0A0B4J263 DUX4L28-201ENST00000623687 678 ntBASIC21.46■■□□□ 1.03
TRAV39A0A0B4J263 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
TRAV39A0A0B4J263 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC21.45■■□□□ 1.02
TRAV39A0A0B4J263 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
TRAV39A0A0B4J263 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC21.45■■□□□ 1.02
TRAV39A0A0B4J263 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC21.45■■□□□ 1.02
TRAV39A0A0B4J263 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC21.45■■□□□ 1.02
TRAV39A0A0B4J263 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
TRAV39A0A0B4J263 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
TRAV39A0A0B4J263 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
TRAV39A0A0B4J263 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
TRAV39A0A0B4J263 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TRAV39A0A0B4J263 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC21.43■■□□□ 1.02
TRAV39A0A0B4J263 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC21.43■■□□□ 1.02
TRAV39A0A0B4J263 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TRAV39A0A0B4J263 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TRAV39A0A0B4J263 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TRAV39A0A0B4J263 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC21.42■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 11.7 ms