Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC5.28□□□□□ -1.56
CXCL1P09341 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CXCL1P09341 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
CXCL1P09341 PCYT1B-201ENST00000356768 1289 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CXCL1P09341 SNORD8-201ENST00000363915 110 ntBASIC5.28□□□□□ -1.56
CXCL1P09341 RNA5SP238-201ENST00000365464 120 ntBASIC5.28□□□□□ -1.56
CXCL1P09341 NR1I3-203ENST00000367981 1076 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CXCL1P09341 LCN1P2-201ENST00000372030 223 ntBASIC5.28□□□□□ -1.56
CXCL1P09341 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
CXCL1P09341 LINC00159-202ENST00000414877 428 ntTSL 4 BASIC5.28□□□□□ -1.56
CXCL1P09341 EEF1A1P34-201ENST00000419888 1267 ntBASIC5.28□□□□□ -1.56
CXCL1P09341 LINC01811-202ENST00000424786 787 ntTSL 5 BASIC5.28□□□□□ -1.56
CXCL1P09341 AC073900.1-201ENST00000429766 776 ntBASIC5.28□□□□□ -1.56
CXCL1P09341 RPE-205ENST00000429907 925 ntTSL 2 BASIC5.28□□□□□ -1.56
CXCL1P09341 AC092162.2-203ENST00000430460 579 ntTSL 4 BASIC5.28□□□□□ -1.56
CXCL1P09341 AC016683.1-201ENST00000446590 559 ntTSL 4 BASIC5.28□□□□□ -1.56
CXCL1P09341 AL451074.4-201ENST00000447545 470 ntBASIC5.28□□□□□ -1.56
CXCL1P09341 snoU13.29-201ENST00000459370 104 ntBASIC5.28□□□□□ -1.56
CXCL1P09341 RN7SL414P-201ENST00000469545 294 ntBASIC5.28□□□□□ -1.56
CXCL1P09341 AC009269.1-201ENST00000470368 833 ntTSL 3 BASIC5.28□□□□□ -1.56
CXCL1P09341 AC078788.1-201ENST00000498457 634 ntTSL 3 BASIC5.28□□□□□ -1.56
CXCL1P09341 AC097375.1-201ENST00000507949 488 ntTSL 3 BASIC5.28□□□□□ -1.56
CXCL1P09341 LINC01085-203ENST00000511195 326 ntBASIC5.28□□□□□ -1.56
CXCL1P09341 PGAM4P2-201ENST00000512491 721 ntBASIC5.28□□□□□ -1.56
CXCL1P09341 AC055736.1-201ENST00000548135 629 ntTSL 3 BASIC5.28□□□□□ -1.56
CXCL1P09341 ELK3-206ENST00000552142 1242 ntTSL 5 BASIC5.28□□□□□ -1.56
CXCL1P09341 AC063923.2-201ENST00000562158 928 ntBASIC5.28□□□□□ -1.56
CXCL1P09341 AC007494.1-201ENST00000562293 760 ntBASIC5.28□□□□□ -1.56
CXCL1P09341 AC136624.3-201ENST00000571660 567 ntTSL 5 BASIC5.28□□□□□ -1.56
CXCL1P09341 RN7SL835P-201ENST00000579920 262 ntBASIC5.28□□□□□ -1.56
CXCL1P09341 ANKRD20A5P-203ENST00000580200 566 ntTSL 5 BASIC5.28□□□□□ -1.56
CXCL1P09341 MIR4642-201ENST00000583943 82 ntBASIC5.28□□□□□ -1.56
CXCL1P09341 ZNF730-201ENST00000593635 464 ntTSL 3 BASIC5.28□□□□□ -1.56
CXCL1P09341 AC074135.1-202ENST00000600223 563 ntTSL 3 BASIC5.28□□□□□ -1.56
CXCL1P09341 AL109918.2-201ENST00000605188 279 ntBASIC5.28□□□□□ -1.56
CXCL1P09341 AC104184.1-201ENST00000607513 721 ntBASIC5.28□□□□□ -1.56
CXCL1P09341 AL022324.3-201ENST00000609330 747 ntBASIC5.28□□□□□ -1.56
CXCL1P09341 LINC00484-208ENST00000609752 591 ntTSL 4 BASIC5.28□□□□□ -1.56
CXCL1P09341 Metazoa_SRP.180-201ENST00000612546 322 ntBASIC5.28□□□□□ -1.56
CXCL1P09341 AC026951.2-201ENST00000613847 241 ntBASIC5.28□□□□□ -1.56
CXCL1P09341 LINC01742-201ENST00000616333 628 ntTSL 3 BASIC5.28□□□□□ -1.56
CXCL1P09341 EIF5P2-201ENST00000618904 1035 ntBASIC5.28□□□□□ -1.56
CXCL1P09341 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CXCL1P09341 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC5.28□□□□□ -1.56
CXCL1P09341 AC008080.4-201ENST00000420185 1589 ntTSL 2 BASIC5.28□□□□□ -1.56
CXCL1P09341 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
CXCL1P09341 NRP1-205ENST00000374823 3737 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CXCL1P09341 SLAMF6-203ENST00000368059 2743 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
CXCL1P09341 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
CXCL1P09341 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC5.28□□□□□ -1.56
CXCL1P09341 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CXCL1P09341 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CXCL1P09341 KCTD4-201ENST00000379108 1865 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
CXCL1P09341 AC074198.1-201ENST00000506546 1397 ntBASIC5.28□□□□□ -1.56
CXCL1P09341 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CXCL1P09341 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
CXCL1P09341 ANGPT1-206ENST00000520734 1526 ntTSL 2 BASIC5.28□□□□□ -1.56
CXCL1P09341 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
CXCL1P09341 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.57
CXCL1P09341 LSAMP-207ENST00000539563 8821 ntTSL 3 BASIC5.27□□□□□ -1.57
CXCL1P09341 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CXCL1P09341 EEF1A1P12-201ENST00000443590 1346 ntBASIC5.27□□□□□ -1.57
CXCL1P09341 ZRANB3-210ENST00000536680 6943 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CXCL1P09341 CREM-203ENST00000344351 1625 ntTSL 2 BASIC5.27□□□□□ -1.57
CXCL1P09341 TRMT10A-202ENST00000394876 1638 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
CXCL1P09341 GNG13-201ENST00000248150 984 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
CXCL1P09341 SPATA19-201ENST00000299140 861 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
CXCL1P09341 MAPK14-203ENST00000310795 1066 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CXCL1P09341 HMGB1P39-201ENST00000366304 880 ntBASIC5.27□□□□□ -1.57
CXCL1P09341 MIR197-201ENST00000384976 75 ntBASIC5.27□□□□□ -1.57
CXCL1P09341 CEP85L-204ENST00000392500 1872 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CXCL1P09341 KRT18P52-201ENST00000404956 846 ntBASIC5.27□□□□□ -1.57
CXCL1P09341 SLC3A1-206ENST00000409740 1418 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CXCL1P09341 BMP2KL-201ENST00000414251 1225 ntBASIC5.27□□□□□ -1.57
CXCL1P09341 LINC00630-201ENST00000416381 2012 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CXCL1P09341 RPL7AP72-201ENST00000417266 768 ntBASIC5.27□□□□□ -1.57
CXCL1P09341 RPS17P17-201ENST00000419392 409 ntBASIC5.27□□□□□ -1.57
CXCL1P09341 AC146944.2-202ENST00000425529 658 ntTSL 3 BASIC5.27□□□□□ -1.57
CXCL1P09341 AC116038.1-201ENST00000432250 408 ntTSL 3 BASIC5.27□□□□□ -1.57
CXCL1P09341 LINC01852-201ENST00000434223 967 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CXCL1P09341 LINC02474-202ENST00000441160 1148 ntTSL 5 BASIC5.27□□□□□ -1.57
CXCL1P09341 AC244021.2-201ENST00000445260 529 ntTSL 5 BASIC5.27□□□□□ -1.57
CXCL1P09341 RPL24P8-201ENST00000446071 474 ntBASIC5.27□□□□□ -1.57
CXCL1P09341 AC013264.1-201ENST00000449346 455 ntTSL 2 BASIC5.27□□□□□ -1.57
CXCL1P09341 AL035420.1-202ENST00000450129 357 ntTSL 3 BASIC5.27□□□□□ -1.57
CXCL1P09341 AL590004.3-201ENST00000450255 443 ntTSL 5 BASIC5.27□□□□□ -1.57
CXCL1P09341 PMS2P11-201ENST00000451831 574 ntBASIC5.27□□□□□ -1.57
CXCL1P09341 DBIL5P-202ENST00000453414 250 ntBASIC5.27□□□□□ -1.57
CXCL1P09341 MBNL1-213ENST00000465907 945 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CXCL1P09341 ALG13-214ENST00000482742 620 ntTSL 2 BASIC5.27□□□□□ -1.57
CXCL1P09341 RPL23AP82-208ENST00000496652 1112 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CXCL1P09341 AC098487.1-204ENST00000506972 610 ntTSL 3 BASIC5.27□□□□□ -1.57
CXCL1P09341 IGHVII-22-1-201ENST00000517888 265 ntBASIC5.27□□□□□ -1.57
CXCL1P09341 AC103409.1-201ENST00000521199 564 ntTSL 5 BASIC5.27□□□□□ -1.57
CXCL1P09341 AC012574.1-201ENST00000523874 252 ntTSL 5 BASIC5.27□□□□□ -1.57
CXCL1P09341 SMCO2-203ENST00000535986 1096 ntAPPRIS P2 TSL 5 BASIC5.27□□□□□ -1.57
CXCL1P09341 AP000619.1-201ENST00000540293 1000 ntBASIC5.27□□□□□ -1.57
CXCL1P09341 CRADD-210ENST00000552033 622 ntTSL 3 BASIC5.27□□□□□ -1.57
CXCL1P09341 RN7SL376P-201ENST00000578594 264 ntBASIC5.27□□□□□ -1.57
CXCL1P09341 AC005154.1-216ENST00000582145 1101 ntTSL 5 BASIC5.27□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 110.3 ms