Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RPS4XP23-201ENST00000487801 237 ntBASIC11.25□□□□□ -0.61
CUX1P39880 TRIM77BP-201ENST00000524985 1119 ntBASIC11.25□□□□□ -0.61
CUX1P39880 AC090502.3-201ENST00000552046 529 ntTSL 3 BASIC11.25□□□□□ -0.61
CUX1P39880 AL162632.2-201ENST00000553933 399 ntBASIC11.25□□□□□ -0.61
CUX1P39880 AC145350.2-201ENST00000561541 821 ntTSL 5 BASIC11.25□□□□□ -0.61
CUX1P39880 PWRN1-207ENST00000565893 818 ntTSL 3 BASIC11.25□□□□□ -0.61
CUX1P39880 MIR3614-201ENST00000581261 86 ntBASIC11.25□□□□□ -0.61
CUX1P39880 ZNF682-208ENST00000596019 552 ntTSL 5 BASIC11.25□□□□□ -0.61
CUX1P39880 LINC00598-209ENST00000635966 1148 ntTSL 5 BASIC11.25□□□□□ -0.61
CUX1P39880 AC026464.2-201ENST00000567834 2421 ntBASIC11.25□□□□□ -0.61
CUX1P39880 RAI14-208ENST00000506376 3091 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
CUX1P39880 GRPR-201ENST00000380289 1929 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CUX1P39880 PIGN-230ENST00000638977 4601 ntTSL 5 BASIC11.25□□□□□ -0.61
CUX1P39880 AC019270.1-201ENST00000523495 3488 ntTSL 5 BASIC11.25□□□□□ -0.61
CUX1P39880 PGM3-212ENST00000513973 6107 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CUX1P39880 AC009690.2-201ENST00000570175 3148 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
CUX1P39880 SLC11A2-201ENST00000262051 3986 ntAPPRIS ALT1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CUX1P39880 MLIP-201ENST00000274897 1815 ntAPPRIS P3 TSL 2 BASIC11.25□□□□□ -0.61
CUX1P39880 CEP41-219ENST00000616628 3315 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
CUX1P39880 EEF1A1P21-201ENST00000512363 1344 ntBASIC11.25□□□□□ -0.61
CUX1P39880 MTRNR2L8-201ENST00000536684 1303 ntAPPRIS P1 BASIC11.25□□□□□ -0.61
CUX1P39880 SERPINB4-201ENST00000341074 1749 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CUX1P39880 MAPK10-280ENST00000641166 2684 ntAPPRIS ALT1 BASIC11.25□□□□□ -0.61
CUX1P39880 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC11.25□□□□□ -0.61
CUX1P39880 OR2M4-201ENST00000306687 936 ntAPPRIS P1 BASIC11.25□□□□□ -0.61
CUX1P39880 OR4F5-201ENST00000335137 1054 ntAPPRIS P1 BASIC11.25□□□□□ -0.61
CUX1P39880 MTND6P1-201ENST00000417434 424 ntBASIC11.25□□□□□ -0.61
CUX1P39880 CD33-203ENST00000421133 1023 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
CUX1P39880 RPL7L1P11-201ENST00000446092 721 ntBASIC11.25□□□□□ -0.61
CUX1P39880 OR52I1-201ENST00000450052 1050 ntBASIC11.25□□□□□ -0.61
CUX1P39880 AC073409.1-201ENST00000451749 269 ntTSL 3 BASIC11.25□□□□□ -0.61
CUX1P39880 SETP20-201ENST00000457046 852 ntBASIC11.25□□□□□ -0.61
CUX1P39880 AC009879.1-201ENST00000520029 839 ntBASIC11.25□□□□□ -0.61
CUX1P39880 CRYAB-207ENST00000527950 887 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
CUX1P39880 AP002498.1-201ENST00000530190 568 ntTSL 3 BASIC11.25□□□□□ -0.61
CUX1P39880 AC022558.1-201ENST00000560450 454 ntTSL 3 BASIC11.25□□□□□ -0.61
CUX1P39880 SUPT4H1-207ENST00000581540 668 ntTSL 2 BASIC11.25□□□□□ -0.61
CUX1P39880 AC067773.1-201ENST00000603284 1094 ntBASIC11.25□□□□□ -0.61
CUX1P39880 AC091167.5-201ENST00000605689 894 ntBASIC11.25□□□□□ -0.61
CUX1P39880 AP000894.4-201ENST00000610185 483 ntBASIC11.25□□□□□ -0.61
CUX1P39880 MIR6886-201ENST00000619864 61 ntBASIC11.25□□□□□ -0.61
CUX1P39880 OFCC1-218ENST00000622909 754 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
CUX1P39880 THOC5-216ENST00000490103 4753 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
CUX1P39880 FNDC3A-206ENST00000541916 6328 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
CUX1P39880 CCDC129-203ENST00000409210 3773 ntAPPRIS ALT2 TSL 2 BASIC11.24□□□□□ -0.61
CUX1P39880 ABCB1-210ENST00000543898 4524 ntTSL 5 BASIC11.24□□□□□ -0.61
CUX1P39880 CASC19-246ENST00000641625 1606 ntBASIC11.24□□□□□ -0.61
CUX1P39880 ZNF350-201ENST00000243644 2338 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
CUX1P39880 C9orf131-201ENST00000312292 3409 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
CUX1P39880 C8orf34-208ENST00000523686 1948 ntAPPRIS ALT2 TSL 2 BASIC11.24□□□□□ -0.61
CUX1P39880 MID1-212ENST00000616003 1926 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
CUX1P39880 EGFLAM-201ENST00000322350 4411 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
CUX1P39880 ZMYM4-201ENST00000314607 6994 ntAPPRIS P1 TSL 2 BASIC11.24□□□□□ -0.61
CUX1P39880 IAPP-205ENST00000542023 2015 ntTSL 2 BASIC11.24□□□□□ -0.61
CUX1P39880 KCNS3-202ENST00000403915 2397 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
CUX1P39880 PAN2-221ENST00000610546 5301 ntAPPRIS ALT1 TSL 5 BASIC11.24□□□□□ -0.61
CUX1P39880 TRPM3-210ENST00000377111 4618 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
CUX1P39880 PTPRT-211ENST00000618610 3230 ntTSL 5 BASIC11.24□□□□□ -0.61
CUX1P39880 PLEC-207ENST00000398774 14646 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
CUX1P39880 UBN1-208ENST00000590769 3530 ntTSL 2 BASIC11.24□□□□□ -0.61
CUX1P39880 ACTA2-AS1-201ENST00000437930 2450 ntTSL 2 BASIC11.24□□□□□ -0.61
CUX1P39880 RN7SKP78-201ENST00000364711 318 ntBASIC11.24□□□□□ -0.61
CUX1P39880 CYCSP17-201ENST00000407870 315 ntBASIC11.24□□□□□ -0.61
CUX1P39880 SMIM30-204ENST00000441359 962 ntAPPRIS P1 TSL 2 BASIC11.24□□□□□ -0.61
CUX1P39880 SULT1D1P-201ENST00000458020 882 ntBASIC11.24□□□□□ -0.61
CUX1P39880 CHCHD7-210ENST00000521524 703 ntTSL 5 BASIC11.24□□□□□ -0.61
CUX1P39880 SLC7A7-210ENST00000554517 1158 ntTSL 5 BASIC11.24□□□□□ -0.61
CUX1P39880 AC068724.2-201ENST00000565685 532 ntTSL 4 BASIC11.24□□□□□ -0.61
CUX1P39880 AC004448.4-210ENST00000610229 833 ntTSL 5 BASIC11.24□□□□□ -0.61
CUX1P39880 Six3os1_4.1-201ENST00000615706 324 ntBASIC11.24□□□□□ -0.61
CUX1P39880 RBMS3-AS2-206ENST00000629296 438 ntTSL 5 BASIC11.24□□□□□ -0.61
CUX1P39880 AL391117.1-201ENST00000640003 1186 ntTSL 5 BASIC11.24□□□□□ -0.61
CUX1P39880 ESRP1-201ENST00000358397 3756 ntAPPRIS ALT1 TSL 1 (best) BASIC11.24□□□□□ -0.61
CUX1P39880 NLRP3-203ENST00000366496 3996 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
CUX1P39880 TNFRSF19-204ENST00000403372 4277 ntAPPRIS ALT2 TSL 2 BASIC11.23□□□□□ -0.61
CUX1P39880 ZBTB21-203ENST00000398499 5806 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
CUX1P39880 SETD5-204ENST00000406341 6582 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
CUX1P39880 FAM161A-202ENST00000404929 3762 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
CUX1P39880 LUC7L3-208ENST00000505658 7040 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
CUX1P39880 ATP6V0E1-201ENST00000265093 773 ntTSL 2 BASIC11.23□□□□□ -0.61
CUX1P39880 RAET1L-201ENST00000286380 802 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
CUX1P39880 RPS7-201ENST00000304921 786 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
CUX1P39880 LCN1P2-201ENST00000372030 223 ntBASIC11.23□□□□□ -0.61
CUX1P39880 AC066692.1-201ENST00000421721 457 ntBASIC11.23□□□□□ -0.61
CUX1P39880 AL035701.1-202ENST00000437249 371 ntTSL 3 BASIC11.23□□□□□ -0.61
CUX1P39880 AMYP1-201ENST00000440059 1023 ntBASIC11.23□□□□□ -0.61
CUX1P39880 CXCR2P1-202ENST00000443392 1074 ntBASIC11.23□□□□□ -0.61
CUX1P39880 VN2R1P-201ENST00000449668 1743 ntBASIC11.23□□□□□ -0.61
CUX1P39880 AC011625.1-201ENST00000455442 526 ntTSL 4 BASIC11.23□□□□□ -0.61
CUX1P39880 KDELR2-206ENST00000490996 655 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
CUX1P39880 RN7SL101P-201ENST00000496350 279 ntBASIC11.23□□□□□ -0.61
CUX1P39880 IGLVIV-64-201ENST00000518581 301 ntBASIC11.23□□□□□ -0.61
CUX1P39880 AC016405.1-202ENST00000524348 758 ntTSL 3 BASIC11.23□□□□□ -0.61
CUX1P39880 AC090115.2-201ENST00000548060 883 ntBASIC11.23□□□□□ -0.61
CUX1P39880 LINC00556-201ENST00000569603 412 ntBASIC11.23□□□□□ -0.61
CUX1P39880 TTN-AS1-268ENST00000629094 604 ntTSL 5 BASIC11.23□□□□□ -0.61
CUX1P39880 ZBTB40-204ENST00000404138 8992 ntAPPRIS P3 TSL 5 BASIC11.23□□□□□ -0.61
CUX1P39880 CRNKL1-201ENST00000377327 4370 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
CUX1P39880 RASSF6-201ENST00000307439 5994 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
CUX1P39880 UGT2B4-201ENST00000305107 2103 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 180.9 ms