RNA–Protein interactions for RNA: ENST00000377327.8

CRNKL1-201, Transcript of crooked neck pre-mRNA splicing factor 1, humanhuman

TSL 1 (best) BASIC

Gene CRNKL1, Length 4,370 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRNKL1-201ENST00000377327 NISCHQ9Y2I1 1504 aa15.25■□□□□ 0.03
CRNKL1-201ENST00000377327 SUPT5HO00267 1087 aaKnown RBP14.88□□□□□ -0.03
CRNKL1-201ENST00000377327 DCAF8L2P0C7V8 631 aa14.68□□□□□ -0.06
CRNKL1-201ENST00000377327 PELP1Q8IZL8 1130 aaKnown RBP14.67□□□□□ -0.06
CRNKL1-201ENST00000377327 PCGF6Q9BYE7 350 aa14.6□□□□□ -0.07
CRNKL1-201ENST00000377327 SHROOM4Q9ULL8 1493 aa14.57□□□□□ -0.08
CRNKL1-201ENST00000377327 HRCP23327 699 aa14.43□□□□□ -0.1
CRNKL1-201ENST00000377327 MYT1Q01538 1121 aa14.35□□□□□ -0.11
CRNKL1-201ENST00000377327 ZEB1P37275 1124 aaPredicted RBP14.27□□□□□ -0.12
CRNKL1-201ENST00000377327 CENPBP07199 599 aaPredicted RBP14.16□□□□□ -0.14
CRNKL1-201ENST00000377327 PPARGC1BQ86YN6 1023 aaKnown RBP14.07□□□□□ -0.16
CRNKL1-201ENST00000377327 EHMT2Q96KQ7 1210 aa14.07□□□□□ -0.16
CRNKL1-201ENST00000377327 TRIM26Q12899 539 aaPredicted RBP14□□□□□ -0.17
CRNKL1-201ENST00000377327 FAM9AQ8IZU1 332 aaPredicted RBP13.92□□□□□ -0.18
CRNKL1-201ENST00000377327 CCER1Q8TC90 406 aaPredicted RBP13.91□□□□□ -0.18
CRNKL1-201ENST00000377327 CHIC1Q5VXU3 224 aa13.89□□□□□ -0.19
CRNKL1-201ENST00000377327 LOC105371045A0A1W2PR82 267 aa13.76□□□□□ -0.21
CRNKL1-201ENST00000377327 TRIM41Q8WV44 630 aa13.76□□□□□ -0.21
CRNKL1-201ENST00000377327 YTHDC1Q96MU7 727 aaKnown RBP13.73□□□□□ -0.21
CRNKL1-201ENST00000377327 TTBK1Q5TCY1 1321 aaPredicted RBP13.71□□□□□ -0.21
CRNKL1-201ENST00000377327 APLP2Q06481 763 aa13.64□□□□□ -0.23
CRNKL1-201ENST00000377327 GTF3C3Q9Y5Q9 886 aa13.57□□□□□ -0.24
CRNKL1-201ENST00000377327 ERICH6Q7L0X2 663 aa13.57□□□□□ -0.24
CRNKL1-201ENST00000377327 DIEXFQ68CQ4 756 aaKnown RBP13.55□□□□□ -0.24
CRNKL1-201ENST00000377327 ACIN1Q9UKV3 1341 aaKnown RBP13.52□□□□□ -0.25
CRNKL1-201ENST00000377327 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.45□□□□□ -0.26
CRNKL1-201ENST00000377327 SCAF1Q9H7N4 1312 aaKnown RBP13.45□□□□□ -0.26
CRNKL1-201ENST00000377327 NEFLP07196 543 aa13.44□□□□□ -0.26
CRNKL1-201ENST00000377327 UBTFP17480 764 aaKnown RBP13.35□□□□□ -0.27
CRNKL1-201ENST00000377327 DCAF1Q9Y4B6 1507 aa13.33□□□□□ -0.28
CRNKL1-201ENST00000377327 NEUROD1Q13562 356 aa13.29□□□□□ -0.28
CRNKL1-201ENST00000377327 RANGAP1P46060 587 aaPredicted RBP13.23□□□□□ -0.29
CRNKL1-201ENST00000377327 ZNF316A6NFI3 1004 aaPredicted RBP13.21□□□□□ -0.29
CRNKL1-201ENST00000377327 HNRNPUL2Q1KMD3 747 aaKnown RBP13.19□□□□□ -0.3
CRNKL1-201ENST00000377327 MYO15BQ96JP2 1530 aa13.15□□□□□ -0.3
CRNKL1-201ENST00000377327 BCANQ96GW7 911 aa13.03□□□□□ -0.32
CRNKL1-201ENST00000377327 CLSPNQ9HAW4 1339 aa13.03□□□□□ -0.32
CRNKL1-201ENST00000377327 CCDC180Q9P1Z9 1646 aa12.95□□□□□ -0.34
CRNKL1-201ENST00000377327 ITGAEP38570 1179 aa12.93□□□□□ -0.34
CRNKL1-201ENST00000377327 RTL5Q5HYW3 569 aaPredicted RBP12.92□□□□□ -0.34
CRNKL1-201ENST00000377327 ATP1B4Q9UN42 357 aaPredicted RBP12.91□□□□□ -0.34
CRNKL1-201ENST00000377327 MIER1Q8N108 512 aa12.89□□□□□ -0.35
CRNKL1-201ENST00000377327 CDK11AQ9UQ88 783 aaPredicted RBP12.88□□□□□ -0.35
CRNKL1-201ENST00000377327 ANP32EQ9BTT0 268 aa12.85□□□□□ -0.35
CRNKL1-201ENST00000377327 FKBP8Q14318 412 aa12.81□□□□□ -0.36
CRNKL1-201ENST00000377327 DAXXQ9UER7 740 aaPredicted RBP12.8□□□□□ -0.36
CRNKL1-201ENST00000377327 ZCCHC6Q5VYS8 1495 aaKnown RBP12.79□□□□□ -0.36
CRNKL1-201ENST00000377327 ANP32CO43423 234 aa12.78□□□□□ -0.36
CRNKL1-201ENST00000377327 MYT1LQ9UL68 1186 aa12.74□□□□□ -0.37
CRNKL1-201ENST00000377327 BCL11AQ9H165 835 aa12.72□□□□□ -0.37
CRNKL1-201ENST00000377327 CSRNP3Q8WYN3 585 aa12.69□□□□□ -0.38
CRNKL1-201ENST00000377327 SUPT16HQ9Y5B9 1047 aaKnown RBP12.65□□□□□ -0.38
CRNKL1-201ENST00000377327 POLR3GLQ9BT43 218 aa12.63□□□□□ -0.39
CRNKL1-201ENST00000377327 CNGB1Q14028 1251 aaPredicted RBP12.62□□□□□ -0.39
CRNKL1-201ENST00000377327 ANP32AP39687 249 aaKnown RBP12.61□□□□□ -0.39
CRNKL1-201ENST00000377327 FAM50AQ14320 339 aaKnown RBP12.6□□□□□ -0.39
CRNKL1-201ENST00000377327 DDX10Q13206 875 aaKnown RBP12.6□□□□□ -0.39
CRNKL1-201ENST00000377327 TRIM52Q96A61 297 aa12.57□□□□□ -0.4
CRNKL1-201ENST00000377327 HNRNPUQ00839 825 aaKnown RBP eCLIP12.53□□□□□ -0.4
CRNKL1-201ENST00000377327 NBR1Q14596 966 aa12.52□□□□□ -0.4
CRNKL1-201ENST00000377327 EIF5BO60841 1220 aaKnown RBP12.51□□□□□ -0.41
CRNKL1-201ENST00000377327 TSHZ2Q9NRE2 1034 aa12.5□□□□□ -0.41
CRNKL1-201ENST00000377327 ZBTB47Q9UFB7 747 aaPredicted RBP12.46□□□□□ -0.42
CRNKL1-201ENST00000377327 RBM19Q9Y4C8 960 aaKnown RBP12.45□□□□□ -0.42
CRNKL1-201ENST00000377327 CEP162Q5TB80 1403 aa12.45□□□□□ -0.42
CRNKL1-201ENST00000377327 NPM2Q86SE8 214 aaKnown RBP12.44□□□□□ -0.42
CRNKL1-201ENST00000377327 IRX6P78412 446 aaPredicted RBP12.43□□□□□ -0.42
CRNKL1-201ENST00000377327 ABCC9O60706 1549 aa12.43□□□□□ -0.42
CRNKL1-201ENST00000377327 RSF1Q96T23 1441 aaPredicted RBP12.42□□□□□ -0.42
CRNKL1-201ENST00000377327 CCDC136Q96JN2 1154 aa12.37□□□□□ -0.43
CRNKL1-201ENST00000377327 FAM9BQ8IZU0 186 aa12.37□□□□□ -0.43
CRNKL1-201ENST00000377327 TONSLQ96HA7 1378 aa12.36□□□□□ -0.43
CRNKL1-201ENST00000377327 TNIKQ9UKE5 1360 aa12.36□□□□□ -0.43
CRNKL1-201ENST00000377327 CLIP1P30622 1438 aa12.34□□□□□ -0.43
CRNKL1-201ENST00000377327 HIRIP3Q9BW71 556 aaPredicted RBP12.33□□□□□ -0.44
CRNKL1-201ENST00000377327 DEKP35659 375 aaKnown RBP12.33□□□□□ -0.44
CRNKL1-201ENST00000377327 GLIPR1L2Q4G1C9 344 aa12.32□□□□□ -0.44
CRNKL1-201ENST00000377327 EEA1Q15075 1411 aa12.31□□□□□ -0.44
CRNKL1-201ENST00000377327 PPP4R2Q9NY27 417 aa12.29□□□□□ -0.44
CRNKL1-201ENST00000377327 SCRIBQ14160 1630 aa12.29□□□□□ -0.44
CRNKL1-201ENST00000377327 NOP58Q9Y2X3 529 aaKnown RBP12.29□□□□□ -0.44
CRNKL1-201ENST00000377327 MRS2Q9HD23 443 aa12.28□□□□□ -0.44
CRNKL1-201ENST00000377327 GOLGA3Q08378 1498 aa12.27□□□□□ -0.45
CRNKL1-201ENST00000377327 ZNF326Q5BKZ1 582 aaKnown RBP12.26□□□□□ -0.45
CRNKL1-201ENST00000377327 RTN4Q9NQC3 1192 aaKnown RBP12.23□□□□□ -0.45
CRNKL1-201ENST00000377327 CCER2I3L3R5 266 aa12.22□□□□□ -0.45
CRNKL1-201ENST00000377327 RB1CC1Q8TDY2 1594 aa12.21□□□□□ -0.45
CRNKL1-201ENST00000377327 P3H3Q8IVL6 736 aa12.21□□□□□ -0.46
CRNKL1-201ENST00000377327 B4GALNT3Q6L9W6 998 aa12.18□□□□□ -0.46
CRNKL1-201ENST00000377327 PPM1GO15355 546 aaPredicted RBP12.18□□□□□ -0.46
CRNKL1-201ENST00000377327 NEFMP07197 916 aa12.17□□□□□ -0.46
CRNKL1-201ENST00000377327 TMC1Q8TDI8 760 aa12.17□□□□□ -0.46
CRNKL1-201ENST00000377327 ERICH6BQ5W0A0 696 aa12.16□□□□□ -0.46
CRNKL1-201ENST00000377327 PABPN1Q86U42 306 aaKnown RBP eCLIP12.16□□□□□ -0.46
CRNKL1-201ENST00000377327 EIF4G2P78344 907 aaKnown RBP eCLIP12.16□□□□□ -0.46
CRNKL1-201ENST00000377327 DDRGK1Q96HY6 314 aa12.15□□□□□ -0.46
CRNKL1-201ENST00000377327 SIN3AQ96ST3 1273 aa12.15□□□□□ -0.46
CRNKL1-201ENST00000377327 CEP164Q9UPV0 1460 aa12.13□□□□□ -0.47
CRNKL1-201ENST00000377327 SALL2Q9Y467 1007 aaPredicted RBP12.13□□□□□ -0.47
CRNKL1-201ENST00000377327 WRNQ14191 1432 aaPredicted RBP eCLIP12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms