Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC242426.1-201ENST00000435270 960 ntBASIC11.38□□□□□ -0.59
CUX1P39880 RPL5P7-201ENST00000444235 813 ntBASIC11.38□□□□□ -0.59
CUX1P39880 GLYCTK-AS1-202ENST00000472761 109 ntTSL 5 BASIC11.38□□□□□ -0.59
CUX1P39880 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC11.38□□□□□ -0.59
CUX1P39880 SNX24-205ENST00000506996 588 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
CUX1P39880 AC069234.2-202ENST00000535720 583 ntTSL 5 BASIC11.38□□□□□ -0.59
CUX1P39880 AC007496.2-201ENST00000564801 547 ntTSL 4 BASIC11.38□□□□□ -0.59
CUX1P39880 MIR4502-201ENST00000580432 81 ntBASIC11.38□□□□□ -0.59
CUX1P39880 MIR4701-201ENST00000583094 63 ntBASIC11.38□□□□□ -0.59
CUX1P39880 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC11.38□□□□□ -0.59
CUX1P39880 AP001052.1-201ENST00000626421 99 ntBASIC11.38□□□□□ -0.59
CUX1P39880 RGS5-215ENST00000439699 1441 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
CUX1P39880 CCDC149-204ENST00000504487 3869 ntAPPRIS ALT2 TSL 2 BASIC11.38□□□□□ -0.59
CUX1P39880 Z97989.1-201ENST00000531702 2421 ntBASIC11.38□□□□□ -0.59
CUX1P39880 ACOT13-203ENST00000537591 4391 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
CUX1P39880 ERN1-201ENST00000433197 7876 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
CUX1P39880 POGZ-201ENST00000271715 6626 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
CUX1P39880 EEF1A1P12-201ENST00000443590 1346 ntBASIC11.38□□□□□ -0.59
CUX1P39880 LINC00269-201ENST00000399711 2173 ntTSL 2 BASIC11.38□□□□□ -0.59
CUX1P39880 CAST-228ENST00000509903 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
CUX1P39880 MAP7D3-204ENST00000370663 4446 ntAPPRIS ALT2 TSL 2 BASIC11.38□□□□□ -0.59
CUX1P39880 KANK1-205ENST00000382297 5051 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CUX1P39880 DIDO1-206ENST00000395340 7551 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
CUX1P39880 AC243772.3-201ENST00000617878 1537 ntTSL 5 BASIC11.37□□□□□ -0.59
CUX1P39880 LINC00960-202ENST00000492922 2126 ntTSL 2 BASIC11.37□□□□□ -0.59
CUX1P39880 TEX9-209ENST00000561221 2297 ntTSL 5 BASIC11.37□□□□□ -0.59
CUX1P39880 STIL-203ENST00000371877 5009 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
CUX1P39880 RN7SKP232-201ENST00000410170 290 ntBASIC11.37□□□□□ -0.59
CUX1P39880 AC009518.1-202ENST00000415393 1229 ntTSL 2 BASIC11.37□□□□□ -0.59
CUX1P39880 CD109-202ENST00000422508 9221 ntAPPRIS ALT1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CUX1P39880 OR13C7-201ENST00000424348 959 ntAPPRIS P1 BASIC11.37□□□□□ -0.59
CUX1P39880 AC005532.1-201ENST00000430266 471 ntTSL 5 BASIC11.37□□□□□ -0.59
CUX1P39880 OSTN-AS1-201ENST00000430375 515 ntTSL 5 BASIC11.37□□□□□ -0.59
CUX1P39880 AC069154.1-201ENST00000432914 542 ntBASIC11.37□□□□□ -0.59
CUX1P39880 CBX1-205ENST00000495350 550 ntTSL 2 BASIC11.37□□□□□ -0.59
CUX1P39880 AC092718.4-201ENST00000566639 716 ntBASIC11.37□□□□□ -0.59
CUX1P39880 RBM7-204ENST00000541475 6725 ntTSL 2 BASIC11.37□□□□□ -0.59
CUX1P39880 FAM122C-211ENST00000623326 2064 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
CUX1P39880 PRDM11-206ENST00000622142 10730 ntAPPRIS ALT2 TSL 5 BASIC11.37□□□□□ -0.59
CUX1P39880 CYFIP2-221ENST00000618329 4256 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CUX1P39880 PRICKLE2-204ENST00000564377 8032 ntAPPRIS P2 TSL 5 BASIC11.37□□□□□ -0.59
CUX1P39880 PSMD5-AS1-213ENST00000640327 3531 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
CUX1P39880 CA10-204ENST00000570565 2276 ntTSL 5 BASIC11.37□□□□□ -0.59
CUX1P39880 CHURC1-203ENST00000549115 2629 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
CUX1P39880 EIF1-203ENST00000469257 2330 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CUX1P39880 ZBTB43-203ENST00000449886 5851 ntAPPRIS P1 TSL 3 BASIC11.37□□□□□ -0.59
CUX1P39880 SLC24A1-209ENST00000537259 3983 ntAPPRIS ALT2 TSL 2 BASIC11.37□□□□□ -0.59
CUX1P39880 PSG1-203ENST00000403380 1722 ntTSL 2 BASIC11.36□□□□□ -0.59
CUX1P39880 PCDH15-226ENST00000613657 6329 ntAPPRIS ALT2 TSL 5 BASIC11.36□□□□□ -0.59
CUX1P39880 NEK1-207ENST00000511633 5536 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
CUX1P39880 ZNF611-202ENST00000453741 4380 ntTSL 4 BASIC11.36□□□□□ -0.59
CUX1P39880 AC005702.3-201ENST00000585345 1447 ntBASIC11.36□□□□□ -0.59
CUX1P39880 ADH7-201ENST00000209665 2289 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
CUX1P39880 KCNMB2-201ENST00000358316 2271 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
CUX1P39880 CX3CR1-202ENST00000399220 3106 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
CUX1P39880 FASLG-201ENST00000340030 917 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
CUX1P39880 HEATR1-201ENST00000366579 793 ntTSL 2 BASIC11.36□□□□□ -0.59
CUX1P39880 AC092865.3-201ENST00000425390 1026 ntBASIC11.36□□□□□ -0.59
CUX1P39880 OR1M1-201ENST00000429566 1035 ntAPPRIS P1 BASIC11.36□□□□□ -0.59
CUX1P39880 RPL7AP23-201ENST00000482625 776 ntBASIC11.36□□□□□ -0.59
CUX1P39880 RAB27A-212ENST00000569493 1013 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
CUX1P39880 AP002345.2-201ENST00000609961 904 ntBASIC11.36□□□□□ -0.59
CUX1P39880 AL512356.3-201ENST00000623005 461 ntBASIC11.36□□□□□ -0.59
CUX1P39880 SCRN3-201ENST00000272732 3037 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
CUX1P39880 FDFT1-208ENST00000525777 1472 ntTSL 2 BASIC11.36□□□□□ -0.59
CUX1P39880 FAM26E-201ENST00000368599 9784 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
CUX1P39880 GABRA1-202ENST00000393943 4686 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
CUX1P39880 BBOX1-201ENST00000263182 1886 ntAPPRIS P1 TSL 5 BASIC11.36□□□□□ -0.59
CUX1P39880 LRP6-206ENST00000543091 4774 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
CUX1P39880 UBAP2L-203ENST00000361546 3864 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
CUX1P39880 ZNF761-202ENST00000432094 4061 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
CUX1P39880 MCM8-202ENST00000378883 3574 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
CUX1P39880 AL596244.1-201ENST00000567068 3779 ntBASIC11.36□□□□□ -0.59
CUX1P39880 ACP6-205ENST00000583509 6923 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
CUX1P39880 OR56A3-201ENST00000329564 948 ntAPPRIS P1 BASIC11.35□□□□□ -0.59
CUX1P39880 AL162430.2-201ENST00000422306 435 ntTSL 3 BASIC11.35□□□□□ -0.59
CUX1P39880 AL160275.1-201ENST00000423632 476 ntAPPRIS P1 TSL 2 BASIC11.35□□□□□ -0.59
CUX1P39880 SNRPBP1-201ENST00000443634 282 ntBASIC11.35□□□□□ -0.59
CUX1P39880 AC107072.1-201ENST00000449007 110 ntTSL 3 BASIC11.35□□□□□ -0.59
CUX1P39880 LINC01618-201ENST00000514957 727 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
CUX1P39880 IGKV3D-25-201ENST00000519599 235 ntBASIC11.35□□□□□ -0.59
CUX1P39880 AC145285.4-201ENST00000568183 540 ntTSL 3 BASIC11.35□□□□□ -0.59
CUX1P39880 AC008752.2-201ENST00000591174 750 ntTSL 3 BASIC11.35□□□□□ -0.59
CUX1P39880 MIR7854-201ENST00000620068 65 ntBASIC11.35□□□□□ -0.59
CUX1P39880 MMP25-AS1-206ENST00000573130 4434 ntTSL 2 BASIC11.35□□□□□ -0.59
CUX1P39880 EPB41-206ENST00000373798 5933 ntAPPRIS P1 TSL 5 BASIC11.35□□□□□ -0.59
CUX1P39880 AURKA-203ENST00000371356 2112 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
CUX1P39880 AC022613.3-201ENST00000560740 1346 ntBASIC11.35□□□□□ -0.59
CUX1P39880 ZNF235-201ENST00000291182 3188 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
CUX1P39880 LMO7-205ENST00000377534 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
CUX1P39880 SYT2-202ENST00000367268 7598 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
CUX1P39880 NBPF15-206ENST00000581897 4272 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
CUX1P39880 SMG1P4-203ENST00000517529 1589 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
CUX1P39880 CHRM5-202ENST00000557872 2687 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
CUX1P39880 HSD17B4-202ENST00000414835 2551 ntTSL 2 BASIC11.35□□□□□ -0.59
CUX1P39880 RSPH4A-201ENST00000229554 2825 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
CUX1P39880 DAZ2-207ENST00000382449 3791 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
CUX1P39880 WDR11-201ENST00000263461 4732 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
CUX1P39880 TTI1-201ENST00000373447 3825 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
CUX1P39880 GCNT1P4-201ENST00000404096 329 ntBASIC11.35□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 84.5 ms