Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 Y_RNA.804-201ENST00000615262 101 ntBASIC7.98□□□□□ -1.13
MSX1P28360 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC7.98□□□□□ -1.13
MSX1P28360 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC7.98□□□□□ -1.13
MSX1P28360 AC011483.4-201ENST00000623621 585 ntBASIC7.98□□□□□ -1.13
MSX1P28360 CAB39-207ENST00000614925 1619 ntTSL 5 BASIC7.98□□□□□ -1.13
MSX1P28360 EPPIN-202ENST00000354280 1987 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
MSX1P28360 LRRC4C-204ENST00000530763 2669 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
MSX1P28360 CYP2C18-202ENST00000339022 1471 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
MSX1P28360 MEMO1-203ENST00000404530 1482 ntAPPRIS P1 TSL 2 BASIC7.98□□□□□ -1.13
MSX1P28360 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC7.98□□□□□ -1.13
MSX1P28360 FGFR2-206ENST00000358487 4255 ntAPPRIS ALT1 TSL 1 (best) BASIC7.98□□□□□ -1.13
MSX1P28360 FAM186A-201ENST00000327337 7127 ntAPPRIS P2 TSL 5 BASIC7.98□□□□□ -1.13
MSX1P28360 C1orf87-201ENST00000371201 2028 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
MSX1P28360 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC7.98□□□□□ -1.13
MSX1P28360 MIR3976HG-202ENST00000566533 1690 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
MSX1P28360 KYNUP3-201ENST00000574386 1341 ntBASIC7.98□□□□□ -1.13
MSX1P28360 RGS4-204ENST00000421743 3311 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
MSX1P28360 SYT14-202ENST00000367019 2997 ntAPPRIS ALT2 TSL 1 (best) BASIC7.98□□□□□ -1.13
MSX1P28360 NBPF19-204ENST00000611931 2051 ntTSL 5 BASIC7.98□□□□□ -1.13
MSX1P28360 NBPF14-205ENST00000614329 2051 ntTSL 5 BASIC7.98□□□□□ -1.13
MSX1P28360 NBPF26-205ENST00000615219 2051 ntTSL 5 BASIC7.98□□□□□ -1.13
MSX1P28360 NBPF14-207ENST00000616120 2051 ntTSL 5 BASIC7.98□□□□□ -1.13
MSX1P28360 NBPF12-207ENST00000617864 2051 ntTSL 5 BASIC7.98□□□□□ -1.13
MSX1P28360 NBPF20-204ENST00000620821 2051 ntTSL 5 BASIC7.98□□□□□ -1.13
MSX1P28360 AP001043.1-202ENST00000380931 5027 ntTSL 2 BASIC7.97□□□□□ -1.13
MSX1P28360 MCM8-202ENST00000378883 3574 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
MSX1P28360 CNR1-204ENST00000428600 1550 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
MSX1P28360 ZNF410-224ENST00000615736 1551 ntTSL 5 BASIC7.97□□□□□ -1.13
MSX1P28360 KCNH5-204ENST00000420622 2711 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
MSX1P28360 C18orf32-203ENST00000613385 5395 ntAPPRIS P1 TSL 2 BASIC7.97□□□□□ -1.13
MSX1P28360 GSTCD-201ENST00000360505 2154 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
MSX1P28360 MTHFD1-201ENST00000216605 3136 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
MSX1P28360 TSC22D1-201ENST00000261489 3135 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
MSX1P28360 AC007388.1-201ENST00000426083 1438 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
MSX1P28360 AL157700.1-201ENST00000561973 1432 ntBASIC7.97□□□□□ -1.13
MSX1P28360 TMEM136-204ENST00000529187 3930 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
MSX1P28360 UTP15-202ENST00000508491 1828 ntTSL 2 BASIC7.97□□□□□ -1.13
MSX1P28360 PDE1A-203ENST00000409365 2034 ntTSL 5 BASIC7.97□□□□□ -1.13
MSX1P28360 PPFIA2-204ENST00000541017 4192 ntTSL 2 BASIC7.97□□□□□ -1.13
MSX1P28360 ZIM3-201ENST00000269834 2627 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
MSX1P28360 ABI1-209ENST00000376166 3441 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
MSX1P28360 ERC1-202ENST00000355446 5796 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
MSX1P28360 RPL7A-201ENST00000315731 680 ntTSL 2 BASIC7.97□□□□□ -1.13
MSX1P28360 HNMT-203ENST00000329366 835 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
MSX1P28360 FXYD1-201ENST00000351325 592 ntAPPRIS P1 TSL 2 BASIC7.97□□□□□ -1.13
MSX1P28360 GIP-201ENST00000357424 716 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
MSX1P28360 Metazoa_SRP.2-201ENST00000359385 269 ntBASIC7.97□□□□□ -1.13
MSX1P28360 FKBP1A-203ENST00000381724 976 ntTSL 2 BASIC7.97□□□□□ -1.13
MSX1P28360 RAN-201ENST00000392367 780 ntTSL 5 BASIC7.97□□□□□ -1.13
MSX1P28360 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
MSX1P28360 PPP1R17-202ENST00000409146 569 ntTSL 2 BASIC7.97□□□□□ -1.13
MSX1P28360 RPL7P8-201ENST00000411964 730 ntBASIC7.97□□□□□ -1.13
MSX1P28360 ATP5HP4-201ENST00000414313 475 ntBASIC7.97□□□□□ -1.13
MSX1P28360 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC7.97□□□□□ -1.13
MSX1P28360 DNAJA1P2-201ENST00000421360 1197 ntBASIC7.97□□□□□ -1.13
MSX1P28360 USP9YP18-201ENST00000425912 695 ntBASIC7.97□□□□□ -1.13
MSX1P28360 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC7.97□□□□□ -1.13
MSX1P28360 MTAPP2-201ENST00000437063 832 ntBASIC7.97□□□□□ -1.13
MSX1P28360 PRSS37-203ENST00000438520 826 ntAPPRIS P1 TSL 5 BASIC7.97□□□□□ -1.13
MSX1P28360 RPS10P3-201ENST00000439253 494 ntBASIC7.97□□□□□ -1.13
MSX1P28360 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC7.97□□□□□ -1.13
MSX1P28360 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC7.97□□□□□ -1.13
MSX1P28360 AC105393.1-202ENST00000449621 598 ntTSL 3 BASIC7.97□□□□□ -1.13
MSX1P28360 AL357127.1-201ENST00000451295 438 ntTSL 3 BASIC7.97□□□□□ -1.13
MSX1P28360 SPATA24-203ENST00000451821 646 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
MSX1P28360 AC008026.1-201ENST00000460492 447 ntBASIC7.97□□□□□ -1.13
MSX1P28360 AC025062.1-201ENST00000465163 644 ntBASIC7.97□□□□□ -1.13
MSX1P28360 RN7SL659P-201ENST00000483093 299 ntBASIC7.97□□□□□ -1.13
MSX1P28360 AC092943.1-201ENST00000485389 878 ntBASIC7.97□□□□□ -1.13
MSX1P28360 IGKV1D-16-201ENST00000492446 378 ntAPPRIS P1 BASIC7.97□□□□□ -1.13
MSX1P28360 AC044787.1-201ENST00000497325 792 ntBASIC7.97□□□□□ -1.13
MSX1P28360 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC7.97□□□□□ -1.13
MSX1P28360 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC7.97□□□□□ -1.13
MSX1P28360 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC7.97□□□□□ -1.13
MSX1P28360 LINC00499-204ENST00000515282 579 ntTSL 5 BASIC7.97□□□□□ -1.13
MSX1P28360 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC7.97□□□□□ -1.13
MSX1P28360 ATP6V1G1P2-201ENST00000522436 346 ntBASIC7.97□□□□□ -1.13
MSX1P28360 AC002428.1-201ENST00000523722 771 ntTSL 3 BASIC7.97□□□□□ -1.13
MSX1P28360 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC7.97□□□□□ -1.13
MSX1P28360 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC7.97□□□□□ -1.13
MSX1P28360 PRB4-203ENST00000535904 796 ntAPPRIS P3 TSL 2 BASIC7.97□□□□□ -1.13
MSX1P28360 GSG1-206ENST00000537302 1028 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
MSX1P28360 VWA3A-205ENST00000563755 861 ntAPPRIS ALT2 TSL 1 (best) BASIC7.97□□□□□ -1.13
MSX1P28360 ULK4P3-201ENST00000563895 440 ntBASIC7.97□□□□□ -1.13
MSX1P28360 AC013565.2-201ENST00000564874 310 ntBASIC7.97□□□□□ -1.13
MSX1P28360 MTCO3P13-201ENST00000577757 781 ntBASIC7.97□□□□□ -1.13
MSX1P28360 AA06-201ENST00000579745 632 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
MSX1P28360 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC7.97□□□□□ -1.13
MSX1P28360 MIR4435-2HG-217ENST00000604981 759 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
MSX1P28360 AC048344.3-201ENST00000605512 251 ntBASIC7.97□□□□□ -1.13
MSX1P28360 AL159169.3-201ENST00000608871 561 ntBASIC7.97□□□□□ -1.13
MSX1P28360 AL159169.2-201ENST00000610061 1269 ntBASIC7.97□□□□□ -1.13
MSX1P28360 AC025594.3-201ENST00000613068 790 ntBASIC7.97□□□□□ -1.13
MSX1P28360 AC139769.3-201ENST00000618383 175 ntBASIC7.97□□□□□ -1.13
MSX1P28360 FTH1-212ENST00000620041 825 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
MSX1P28360 KDM5DP1-201ENST00000622542 298 ntBASIC7.97□□□□□ -1.13
MSX1P28360 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC7.97□□□□□ -1.13
MSX1P28360 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC7.97□□□□□ -1.13
MSX1P28360 AMZ2-205ENST00000577866 1492 ntAPPRIS P1 TSL 5 BASIC7.97□□□□□ -1.13
MSX1P28360 RNF138-201ENST00000257190 2071 ntTSL 2 BASIC7.97□□□□□ -1.13
Retrieved 100 of 98,524 protein–RNA pairs in 68.3 ms