RNA–Protein interactions for RNA: ENST00000269834.1

ZIM3-201, Transcript of zinc finger imprinted 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ZIM3, Length 2,627 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZIM3-201ENST00000269834 CHIC1Q5VXU3 224 aa17.96■□□□□ 0.47
ZIM3-201ENST00000269834 AEBP2Q6ZN18 517 aaPredicted RBP17.27■□□□□ 0.36
ZIM3-201ENST00000269834 EHMT2Q96KQ7 1210 aa16.3■□□□□ 0.2
ZIM3-201ENST00000269834 PHF23Q9BUL5 403 aaPredicted RBP16.26■□□□□ 0.19
ZIM3-201ENST00000269834 SLC24A1O60721 1099 aa16.23■□□□□ 0.19
ZIM3-201ENST00000269834 PLPPR3Q6T4P5 718 aa15.56■□□□□ 0.08
ZIM3-201ENST00000269834 NISCHQ9Y2I1 1504 aa15.43■□□□□ 0.06
ZIM3-201ENST00000269834 KCNA4P22459 653 aa15.31■□□□□ 0.04
ZIM3-201ENST00000269834 RTN4Q9NQC3 1192 aaKnown RBP15.26■□□□□ 0.03
ZIM3-201ENST00000269834 CSRNP3Q8WYN3 585 aa15.23■□□□□ 0.03
ZIM3-201ENST00000269834 AMER1Q5JTC6 1135 aaPredicted RBP14.75□□□□□ -0.05
ZIM3-201ENST00000269834 ADRA2BP18089 450 aa14.66□□□□□ -0.06
ZIM3-201ENST00000269834 SLC4A1APQ9BWU0 796 aaKnown RBP14.63□□□□□ -0.07
ZIM3-201ENST00000269834 NCBP3Q53F19 620 aaKnown RBP14.43□□□□□ -0.1
ZIM3-201ENST00000269834 PRKCSHP14314 528 aaPredicted RBP14.41□□□□□ -0.1
ZIM3-201ENST00000269834 SENP3Q9H4L4 574 aaPredicted RBP14.36□□□□□ -0.11
ZIM3-201ENST00000269834 ZBTB22O15209 634 aa14.23□□□□□ -0.13
ZIM3-201ENST00000269834 DAXXQ9UER7 740 aaPredicted RBP14.09□□□□□ -0.15
ZIM3-201ENST00000269834 DNAJC5Q9H3Z4 198 aa14.03□□□□□ -0.16
ZIM3-201ENST00000269834 PPP6R1Q9UPN7 881 aa13.98□□□□□ -0.17
ZIM3-201ENST00000269834 TAOK2Q9UL54 1235 aa13.86□□□□□ -0.19
ZIM3-201ENST00000269834 TIMELESSQ9UNS1 1208 aa13.84□□□□□ -0.19
ZIM3-201ENST00000269834 NPM3O75607 178 aaKnown RBP13.78□□□□□ -0.2
ZIM3-201ENST00000269834 TPRNQ4KMQ1 711 aa13.7□□□□□ -0.22
ZIM3-201ENST00000269834 PLCB2Q00722 1185 aa13.69□□□□□ -0.22
ZIM3-201ENST00000269834 PPP4R3CPQ6ZMV5 832 aa13.69□□□□□ -0.22
ZIM3-201ENST00000269834 BCANQ96GW7 911 aa13.67□□□□□ -0.22
ZIM3-201ENST00000269834 TULP1O00294 542 aaPredicted RBP13.66□□□□□ -0.22
ZIM3-201ENST00000269834 FKBP8Q14318 412 aa13.66□□□□□ -0.22
ZIM3-201ENST00000269834 HAP1P54257 671 aaPredicted RBP13.62□□□□□ -0.23
ZIM3-201ENST00000269834 POTEDQ86YR6 584 aa13.62□□□□□ -0.23
ZIM3-201ENST00000269834 ARXQ96QS3 562 aa13.53□□□□□ -0.24
ZIM3-201ENST00000269834 FOXD1Q16676 465 aa13.51□□□□□ -0.25
ZIM3-201ENST00000269834 DNAJC5BQ9UF47 199 aa13.47□□□□□ -0.25
ZIM3-201ENST00000269834 FOXD4L1Q9NU39 408 aa13.34□□□□□ -0.27
ZIM3-201ENST00000269834 CCDC180Q9P1Z9 1646 aa13.26□□□□□ -0.29
ZIM3-201ENST00000269834 GTF3C3Q9Y5Q9 886 aa13.24□□□□□ -0.29
ZIM3-201ENST00000269834 KDM2AQ9Y2K7 1162 aa13.22□□□□□ -0.29
ZIM3-201ENST00000269834 HOMEZQ8IX15 550 aa13.2□□□□□ -0.3
ZIM3-201ENST00000269834 FBLN2P98095 1184 aa13.19□□□□□ -0.3
ZIM3-201ENST00000269834 DCAF8L2P0C7V8 631 aa13.15□□□□□ -0.3
ZIM3-201ENST00000269834 VSIG10Q8N0Z9 540 aa13.13□□□□□ -0.31
ZIM3-201ENST00000269834 ZCCHC6Q5VYS8 1495 aaKnown RBP13.13□□□□□ -0.31
ZIM3-201ENST00000269834 PODXL2Q9NZ53 605 aa13.02□□□□□ -0.33
ZIM3-201ENST00000269834 ABCC9O60706 1549 aa12.97□□□□□ -0.33
ZIM3-201ENST00000269834 SHROOM4Q9ULL8 1493 aa12.97□□□□□ -0.33
ZIM3-201ENST00000269834 RANGAP1P46060 587 aaPredicted RBP12.96□□□□□ -0.33
ZIM3-201ENST00000269834 TMEM132AQ24JP5 1023 aa12.94□□□□□ -0.34
ZIM3-201ENST00000269834 KLHL34Q8N239 644 aa12.92□□□□□ -0.34
ZIM3-201ENST00000269834 C14orf37Q86TY3 774 aa12.87□□□□□ -0.35
ZIM3-201ENST00000269834 MSH5O43196 834 aa12.81□□□□□ -0.36
ZIM3-201ENST00000269834 DCAF1Q9Y4B6 1507 aa12.8□□□□□ -0.36
ZIM3-201ENST00000269834 CNKSR2Q8WXI2 1034 aa12.8□□□□□ -0.36
ZIM3-201ENST00000269834 SUPT5HO00267 1087 aaKnown RBP12.77□□□□□ -0.36
ZIM3-201ENST00000269834 PAXIP1Q6ZW49 1069 aaPredicted RBP12.75□□□□□ -0.37
ZIM3-201ENST00000269834 CFAP44Q96MT7 982 aa12.74□□□□□ -0.37
ZIM3-201ENST00000269834 PIAS4Q8N2W9 510 aaPredicted RBP12.68□□□□□ -0.38
ZIM3-201ENST00000269834 TSHZ2Q9NRE2 1034 aa12.68□□□□□ -0.38
ZIM3-201ENST00000269834 MYO15BQ96JP2 1530 aa12.68□□□□□ -0.38
ZIM3-201ENST00000269834 PKD2Q13563 968 aa12.66□□□□□ -0.38
ZIM3-201ENST00000269834 NPM1P06748 294 aaKnown RBP eCLIP12.64□□□□□ -0.39
ZIM3-201ENST00000269834 ERICH6Q7L0X2 663 aa12.63□□□□□ -0.39
ZIM3-201ENST00000269834 NPM2Q86SE8 214 aaKnown RBP12.61□□□□□ -0.39
ZIM3-201ENST00000269834 APLP2Q06481 763 aa12.6□□□□□ -0.39
ZIM3-201ENST00000269834 TRIM26Q12899 539 aaPredicted RBP12.6□□□□□ -0.39
ZIM3-201ENST00000269834 SLC4A2P04920 1241 aa12.59□□□□□ -0.39
ZIM3-201ENST00000269834 UBTFP17480 764 aaKnown RBP12.58□□□□□ -0.4
ZIM3-201ENST00000269834 HRCP23327 699 aa12.57□□□□□ -0.4
ZIM3-201ENST00000269834 NBR1Q14596 966 aa12.55□□□□□ -0.4
ZIM3-201ENST00000269834 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.54□□□□□ -0.4
ZIM3-201ENST00000269834 IFNLR1Q8IU57 520 aaPredicted RBP12.51□□□□□ -0.41
ZIM3-201ENST00000269834 CUX2O14529 1486 aa12.5□□□□□ -0.41
ZIM3-201ENST00000269834 BBXQ8WY36 941 aaPredicted RBP12.48□□□□□ -0.41
ZIM3-201ENST00000269834 ATXN8OSP0DMR3 200 aa12.46□□□□□ -0.41
ZIM3-201ENST00000269834 VASPP50552 380 aaPredicted RBP12.41□□□□□ -0.42
ZIM3-201ENST00000269834 ATF5Q9Y2D1 282 aaPredicted RBP12.38□□□□□ -0.43
ZIM3-201ENST00000269834 MAPK8IP2Q13387 824 aaPredicted RBP12.36□□□□□ -0.43
ZIM3-201ENST00000269834 NACADO15069 1562 aa12.33□□□□□ -0.43
ZIM3-201ENST00000269834 MYCNP04198 464 aaPredicted RBP12.33□□□□□ -0.44
ZIM3-201ENST00000269834 SPRYD3Q8NCJ5 442 aa12.32□□□□□ -0.44
ZIM3-201ENST00000269834 FBXO3Q9UK99 471 aa12.32□□□□□ -0.44
ZIM3-201ENST00000269834 PCGF6Q9BYE7 350 aa12.31□□□□□ -0.44
ZIM3-201ENST00000269834 TRHP20396 242 aaPredicted RBP12.29□□□□□ -0.44
ZIM3-201ENST00000269834 PELP1Q8IZL8 1130 aaKnown RBP12.23□□□□□ -0.45
ZIM3-201ENST00000269834 RB1CC1Q8TDY2 1594 aa12.22□□□□□ -0.45
ZIM3-201ENST00000269834 RSF1Q96T23 1441 aaPredicted RBP12.2□□□□□ -0.46
ZIM3-201ENST00000269834 SCAF1Q9H7N4 1312 aaKnown RBP12.2□□□□□ -0.46
ZIM3-201ENST00000269834 RGL2O15211 777 aa12.2□□□□□ -0.46
ZIM3-201ENST00000269834 SCRIBQ14160 1630 aa12.2□□□□□ -0.46
ZIM3-201ENST00000269834 ECM2O94769 699 aaPredicted RBP12.19□□□□□ -0.46
ZIM3-201ENST00000269834 TRIM41Q8WV44 630 aa12.18□□□□□ -0.46
ZIM3-201ENST00000269834 RNF216Q9NWF9 866 aaPredicted RBP12.16□□□□□ -0.46
ZIM3-201ENST00000269834 LOC105371045A0A1W2PR82 267 aa12.15□□□□□ -0.46
ZIM3-201ENST00000269834 ARID3AQ99856 593 aa12.12□□□□□ -0.47
ZIM3-201ENST00000269834 BRPF1P55201 1214 aaPredicted RBP12.11□□□□□ -0.47
ZIM3-201ENST00000269834 CECR2Q9BXF3 1484 aa12.1□□□□□ -0.47
ZIM3-201ENST00000269834 PPARGC1BQ86YN6 1023 aaKnown RBP12.09□□□□□ -0.47
ZIM3-201ENST00000269834 SPDYE4A6NLX3 237 aa12.07□□□□□ -0.48
ZIM3-201ENST00000269834 ZEB1P37275 1124 aaPredicted RBP12.07□□□□□ -0.48
ZIM3-201ENST00000269834 CHGAP10645 457 aaKnown RBP12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms