Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC38.16■■■■□ 3.7
SHROOM4Q9ULL8 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC38.16■■■■□ 3.7
SHROOM4Q9ULL8 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC38.16■■■■□ 3.7
SHROOM4Q9ULL8 MIR1238-201ENST00000408483 83 ntBASIC38.16■■■■□ 3.7
SHROOM4Q9ULL8 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC38.16■■■■□ 3.7
SHROOM4Q9ULL8 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC38.16■■■■□ 3.7
SHROOM4Q9ULL8 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC38.16■■■■□ 3.7
SHROOM4Q9ULL8 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC38.16■■■■□ 3.7
SHROOM4Q9ULL8 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC38.16■■■■□ 3.7
SHROOM4Q9ULL8 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC38.16■■■■□ 3.7
SHROOM4Q9ULL8 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC38.16■■■■□ 3.7
SHROOM4Q9ULL8 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC38.15■■■■□ 3.7
SHROOM4Q9ULL8 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC38.15■■■■□ 3.7
SHROOM4Q9ULL8 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC38.15■■■■□ 3.7
SHROOM4Q9ULL8 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC38.15■■■■□ 3.7
SHROOM4Q9ULL8 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC38.15■■■■□ 3.7
SHROOM4Q9ULL8 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC38.15■■■■□ 3.7
SHROOM4Q9ULL8 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC38.15■■■■□ 3.7
SHROOM4Q9ULL8 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC38.15■■■■□ 3.7
SHROOM4Q9ULL8 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC38.15■■■■□ 3.7
SHROOM4Q9ULL8 TOLLIP-AS1-201ENST00000530897 939 ntBASIC38.15■■■■□ 3.7
SHROOM4Q9ULL8 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC38.15■■■■□ 3.7
SHROOM4Q9ULL8 LINC00565-201ENST00000562710 2331 ntBASIC38.15■■■■□ 3.7
SHROOM4Q9ULL8 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC38.14■■■■□ 3.7
SHROOM4Q9ULL8 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC38.14■■■■□ 3.7
SHROOM4Q9ULL8 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC38.14■■■■□ 3.7
SHROOM4Q9ULL8 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC38.14■■■■□ 3.7
SHROOM4Q9ULL8 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC38.14■■■■□ 3.7
SHROOM4Q9ULL8 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC38.14■■■■□ 3.7
SHROOM4Q9ULL8 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC38.14■■■■□ 3.7
SHROOM4Q9ULL8 AC104076.2-201ENST00000448912 469 ntBASIC38.14■■■■□ 3.7
SHROOM4Q9ULL8 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC38.14■■■■□ 3.7
SHROOM4Q9ULL8 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC38.14■■■■□ 3.7
SHROOM4Q9ULL8 KRT8P36-201ENST00000489121 1440 ntBASIC38.14■■■■□ 3.7
SHROOM4Q9ULL8 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC38.14■■■■□ 3.7
SHROOM4Q9ULL8 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC38.14■■■■□ 3.7
SHROOM4Q9ULL8 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC38.14■■■■□ 3.7
SHROOM4Q9ULL8 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC38.13■■■■□ 3.69
SHROOM4Q9ULL8 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC38.13■■■■□ 3.69
SHROOM4Q9ULL8 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC38.13■■■■□ 3.69
SHROOM4Q9ULL8 AL121603.2-201ENST00000557373 2117 ntBASIC38.13■■■■□ 3.69
SHROOM4Q9ULL8 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC38.13■■■■□ 3.69
SHROOM4Q9ULL8 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC38.12■■■■□ 3.69
SHROOM4Q9ULL8 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC38.12■■■■□ 3.69
SHROOM4Q9ULL8 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC38.12■■■■□ 3.69
SHROOM4Q9ULL8 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC38.12■■■■□ 3.69
SHROOM4Q9ULL8 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC38.12■■■■□ 3.69
SHROOM4Q9ULL8 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC38.12■■■■□ 3.69
SHROOM4Q9ULL8 WWC2-AS2-201ENST00000578387 2183 ntBASIC38.12■■■■□ 3.69
SHROOM4Q9ULL8 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC38.12■■■■□ 3.69
SHROOM4Q9ULL8 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC38.11■■■■□ 3.69
SHROOM4Q9ULL8 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC38.11■■■■□ 3.69
SHROOM4Q9ULL8 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC38.11■■■■□ 3.69
SHROOM4Q9ULL8 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC38.11■■■■□ 3.69
SHROOM4Q9ULL8 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC38.11■■■■□ 3.69
SHROOM4Q9ULL8 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC38.11■■■■□ 3.69
SHROOM4Q9ULL8 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC38.11■■■■□ 3.69
SHROOM4Q9ULL8 AC022616.7-201ENST00000525383 220 ntBASIC38.11■■■■□ 3.69
SHROOM4Q9ULL8 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC38.11■■■■□ 3.69
SHROOM4Q9ULL8 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC38.11■■■■□ 3.69
SHROOM4Q9ULL8 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC38.11■■■■□ 3.69
SHROOM4Q9ULL8 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC38.11■■■■□ 3.69
SHROOM4Q9ULL8 PLK5-205ENST00000642079 1969 ntBASIC38.11■■■■□ 3.69
SHROOM4Q9ULL8 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC38.11■■■■□ 3.69
SHROOM4Q9ULL8 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC38.1■■■■□ 3.69
SHROOM4Q9ULL8 AL390955.1-201ENST00000428694 934 ntBASIC38.1■■■■□ 3.69
SHROOM4Q9ULL8 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC38.1■■■■□ 3.69
SHROOM4Q9ULL8 METTL23-204ENST00000586752 904 ntTSL 2 BASIC38.1■■■■□ 3.69
SHROOM4Q9ULL8 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC38.1■■■■□ 3.69
SHROOM4Q9ULL8 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC38.1■■■■□ 3.69
SHROOM4Q9ULL8 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC38.1■■■■□ 3.69
SHROOM4Q9ULL8 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC38.09■■■■□ 3.69
SHROOM4Q9ULL8 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC38.09■■■■□ 3.69
SHROOM4Q9ULL8 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC38.09■■■■□ 3.69
SHROOM4Q9ULL8 AC121338.2-201ENST00000622535 1744 ntBASIC38.09■■■■□ 3.69
SHROOM4Q9ULL8 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC38.09■■■■□ 3.69
SHROOM4Q9ULL8 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC38.09■■■■□ 3.69
SHROOM4Q9ULL8 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC38.09■■■■□ 3.69
SHROOM4Q9ULL8 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC38.09■■■■□ 3.69
SHROOM4Q9ULL8 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC38.09■■■■□ 3.69
SHROOM4Q9ULL8 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC38.09■■■■□ 3.69
SHROOM4Q9ULL8 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC38.09■■■■□ 3.69
SHROOM4Q9ULL8 TMA16-209ENST00000513272 803 ntTSL 2 BASIC38.09■■■■□ 3.69
SHROOM4Q9ULL8 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC38.09■■■■□ 3.69
SHROOM4Q9ULL8 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC38.09■■■■□ 3.69
SHROOM4Q9ULL8 NBPF21P-201ENST00000425093 1451 ntBASIC38.08■■■■□ 3.69
SHROOM4Q9ULL8 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC38.08■■■■□ 3.69
SHROOM4Q9ULL8 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC38.08■■■■□ 3.69
SHROOM4Q9ULL8 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC38.07■■■■□ 3.69
SHROOM4Q9ULL8 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC38.07■■■■□ 3.69
SHROOM4Q9ULL8 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC38.07■■■■□ 3.68
SHROOM4Q9ULL8 LGALS8-AS1-201ENST00000487567 1457 ntBASIC38.07■■■■□ 3.68
SHROOM4Q9ULL8 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC38.07■■■■□ 3.68
SHROOM4Q9ULL8 UPK3BP1-201ENST00000428678 509 ntBASIC38.07■■■■□ 3.68
SHROOM4Q9ULL8 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC38.07■■■■□ 3.68
SHROOM4Q9ULL8 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC38.07■■■■□ 3.68
SHROOM4Q9ULL8 AC091076.1-201ENST00000610741 619 ntBASIC38.07■■■■□ 3.68
SHROOM4Q9ULL8 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC38.07■■■■□ 3.68
SHROOM4Q9ULL8 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC38.06■■■■□ 3.68
SHROOM4Q9ULL8 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC38.06■■■■□ 3.68
Retrieved 100 of 98,524 protein–RNA pairs in 12.1 ms