Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
VPS28Q9UK41 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
VPS28Q9UK41 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
VPS28Q9UK41 LINC01006-201ENST00000333319 2292 ntBASIC20.55■□□□□ 0.88
VPS28Q9UK41 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS28Q9UK41 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS28Q9UK41 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS28Q9UK41 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS28Q9UK41 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS28Q9UK41 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS28Q9UK41 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS28Q9UK41 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
VPS28Q9UK41 PRORSD1P-201ENST00000295112 541 ntBASIC20.54■□□□□ 0.88
VPS28Q9UK41 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
VPS28Q9UK41 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC20.54■□□□□ 0.88
VPS28Q9UK41 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC20.54■□□□□ 0.88
VPS28Q9UK41 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC20.54■□□□□ 0.88
VPS28Q9UK41 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC20.54■□□□□ 0.88
VPS28Q9UK41 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC20.54■□□□□ 0.88
VPS28Q9UK41 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
VPS28Q9UK41 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC20.54■□□□□ 0.88
VPS28Q9UK41 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC20.54■□□□□ 0.88
VPS28Q9UK41 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS28Q9UK41 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
VPS28Q9UK41 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
VPS28Q9UK41 PTBP1P-201ENST00000554374 1601 ntBASIC20.53■□□□□ 0.88
VPS28Q9UK41 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.53■□□□□ 0.88
VPS28Q9UK41 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
VPS28Q9UK41 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
VPS28Q9UK41 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
VPS28Q9UK41 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS28Q9UK41 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VPS28Q9UK41 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS28Q9UK41 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
VPS28Q9UK41 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS28Q9UK41 POM121L13P-201ENST00000422362 380 ntBASIC20.53■□□□□ 0.88
VPS28Q9UK41 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC20.53■□□□□ 0.88
VPS28Q9UK41 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC20.53■□□□□ 0.88
VPS28Q9UK41 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS28Q9UK41 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS28Q9UK41 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC20.53■□□□□ 0.88
VPS28Q9UK41 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS28Q9UK41 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS28Q9UK41 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
VPS28Q9UK41 FEM1AP1-201ENST00000431297 1995 ntBASIC20.53■□□□□ 0.88
VPS28Q9UK41 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS28Q9UK41 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VPS28Q9UK41 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS28Q9UK41 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VPS28Q9UK41 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS28Q9UK41 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS28Q9UK41 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
VPS28Q9UK41 H19-201ENST00000411754 1788 ntTSL 5 BASIC20.52■□□□□ 0.88
VPS28Q9UK41 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS28Q9UK41 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS28Q9UK41 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC20.52■□□□□ 0.88
VPS28Q9UK41 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS28Q9UK41 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
VPS28Q9UK41 HLA-G-202ENST00000376815 851 ntBASIC20.52■□□□□ 0.88
VPS28Q9UK41 HLA-G-203ENST00000376818 1127 ntBASIC20.52■□□□□ 0.88
VPS28Q9UK41 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC20.52■□□□□ 0.88
VPS28Q9UK41 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.88
VPS28Q9UK41 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC20.52■□□□□ 0.88
VPS28Q9UK41 KLF2-202ENST00000592003 564 ntTSL 3 BASIC20.52■□□□□ 0.88
VPS28Q9UK41 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC20.52■□□□□ 0.88
VPS28Q9UK41 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.52■□□□□ 0.88
VPS28Q9UK41 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS28Q9UK41 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS28Q9UK41 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS28Q9UK41 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS28Q9UK41 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC20.52■□□□□ 0.88
VPS28Q9UK41 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS28Q9UK41 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.52■□□□□ 0.87
VPS28Q9UK41 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.52■□□□□ 0.87
VPS28Q9UK41 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.87
VPS28Q9UK41 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC20.51■□□□□ 0.87
VPS28Q9UK41 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VPS28Q9UK41 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
VPS28Q9UK41 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
VPS28Q9UK41 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.51■□□□□ 0.87
VPS28Q9UK41 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS28Q9UK41 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VPS28Q9UK41 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS28Q9UK41 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC20.51■□□□□ 0.87
VPS28Q9UK41 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC20.51■□□□□ 0.87
VPS28Q9UK41 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC20.51■□□□□ 0.87
VPS28Q9UK41 MMD2-204ENST00000612910 778 ntTSL 5 BASIC20.51■□□□□ 0.87
VPS28Q9UK41 AC120498.8-201ENST00000614275 531 ntBASIC20.51■□□□□ 0.87
VPS28Q9UK41 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC20.51■□□□□ 0.87
VPS28Q9UK41 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS28Q9UK41 KRT8P20-201ENST00000423953 1409 ntBASIC20.51■□□□□ 0.87
VPS28Q9UK41 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VPS28Q9UK41 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
VPS28Q9UK41 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC20.51■□□□□ 0.87
VPS28Q9UK41 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
VPS28Q9UK41 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC20.5■□□□□ 0.87
VPS28Q9UK41 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
VPS28Q9UK41 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC20.5■□□□□ 0.87
VPS28Q9UK41 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VPS28Q9UK41 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms