Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
MKS1Q9NXB0 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
MKS1Q9NXB0 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
MKS1Q9NXB0 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
MKS1Q9NXB0 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
MKS1Q9NXB0 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
MKS1Q9NXB0 HYI-206ENST00000372434 1025 ntTSL 5 BASIC19.74■□□□□ 0.75
MKS1Q9NXB0 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
MKS1Q9NXB0 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
MKS1Q9NXB0 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
MKS1Q9NXB0 AC093503.3-201ENST00000624917 2352 ntBASIC19.74■□□□□ 0.75
MKS1Q9NXB0 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
MKS1Q9NXB0 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.74■□□□□ 0.75
MKS1Q9NXB0 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
MKS1Q9NXB0 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
MKS1Q9NXB0 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
MKS1Q9NXB0 AL032819.2-201ENST00000624543 2162 ntBASIC19.74■□□□□ 0.75
MKS1Q9NXB0 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
MKS1Q9NXB0 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC19.74■□□□□ 0.75
MKS1Q9NXB0 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
MKS1Q9NXB0 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MKS1Q9NXB0 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
MKS1Q9NXB0 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC19.73■□□□□ 0.75
MKS1Q9NXB0 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC19.73■□□□□ 0.75
MKS1Q9NXB0 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC19.73■□□□□ 0.75
MKS1Q9NXB0 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
MKS1Q9NXB0 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
MKS1Q9NXB0 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC19.73■□□□□ 0.75
MKS1Q9NXB0 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC19.73■□□□□ 0.75
MKS1Q9NXB0 YBX1P1-201ENST00000445822 960 ntBASIC19.73■□□□□ 0.75
MKS1Q9NXB0 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC19.73■□□□□ 0.75
MKS1Q9NXB0 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
MKS1Q9NXB0 AL031963.3-201ENST00000606441 850 ntBASIC19.73■□□□□ 0.75
MKS1Q9NXB0 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC19.73■□□□□ 0.75
MKS1Q9NXB0 KRT16P6-202ENST00000425692 1426 ntBASIC19.73■□□□□ 0.75
MKS1Q9NXB0 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MKS1Q9NXB0 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
MKS1Q9NXB0 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
MKS1Q9NXB0 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC19.73■□□□□ 0.75
MKS1Q9NXB0 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC19.72■□□□□ 0.75
MKS1Q9NXB0 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
MKS1Q9NXB0 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
MKS1Q9NXB0 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
MKS1Q9NXB0 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MKS1Q9NXB0 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
MKS1Q9NXB0 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MKS1Q9NXB0 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MKS1Q9NXB0 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
MKS1Q9NXB0 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MKS1Q9NXB0 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC19.72■□□□□ 0.75
MKS1Q9NXB0 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
MKS1Q9NXB0 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
MKS1Q9NXB0 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
MKS1Q9NXB0 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
MKS1Q9NXB0 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC19.72■□□□□ 0.75
MKS1Q9NXB0 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC19.72■□□□□ 0.75
MKS1Q9NXB0 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MKS1Q9NXB0 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
MKS1Q9NXB0 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
MKS1Q9NXB0 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MKS1Q9NXB0 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MKS1Q9NXB0 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
MKS1Q9NXB0 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC19.71■□□□□ 0.75
MKS1Q9NXB0 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MKS1Q9NXB0 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
MKS1Q9NXB0 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
MKS1Q9NXB0 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
MKS1Q9NXB0 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
MKS1Q9NXB0 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC19.71■□□□□ 0.75
MKS1Q9NXB0 AL162412.1-201ENST00000567129 965 ntBASIC19.71■□□□□ 0.75
MKS1Q9NXB0 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
MKS1Q9NXB0 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC19.71■□□□□ 0.75
MKS1Q9NXB0 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
MKS1Q9NXB0 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC19.71■□□□□ 0.75
MKS1Q9NXB0 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
MKS1Q9NXB0 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
MKS1Q9NXB0 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MKS1Q9NXB0 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MKS1Q9NXB0 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MKS1Q9NXB0 LINC01465-201ENST00000408887 1940 ntBASIC19.7■□□□□ 0.74
MKS1Q9NXB0 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
MKS1Q9NXB0 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC19.7■□□□□ 0.74
MKS1Q9NXB0 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
MKS1Q9NXB0 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
MKS1Q9NXB0 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
MKS1Q9NXB0 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
MKS1Q9NXB0 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.7■□□□□ 0.74
MKS1Q9NXB0 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
MKS1Q9NXB0 KRT18P14-201ENST00000534205 1250 ntBASIC19.7■□□□□ 0.74
MKS1Q9NXB0 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC19.7■□□□□ 0.74
MKS1Q9NXB0 UBE2DNL-204ENST00000602536 740 ntBASIC19.7■□□□□ 0.74
MKS1Q9NXB0 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
MKS1Q9NXB0 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC19.7■□□□□ 0.74
MKS1Q9NXB0 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MKS1Q9NXB0 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
MKS1Q9NXB0 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
MKS1Q9NXB0 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
MKS1Q9NXB0 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC19.7■□□□□ 0.74
MKS1Q9NXB0 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
MKS1Q9NXB0 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms