Protein–RNA interactions for Protein: Q9NSD5

SLC6A13, Sodium- and chloride-dependent GABA transporter 2, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A13Q9NSD5 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SLC6A13Q9NSD5 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
SLC6A13Q9NSD5 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SLC6A13Q9NSD5 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.82■□□□□ 0.6
SLC6A13Q9NSD5 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SLC6A13Q9NSD5 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC18.82■□□□□ 0.6
SLC6A13Q9NSD5 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC18.82■□□□□ 0.6
SLC6A13Q9NSD5 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC18.82■□□□□ 0.6
SLC6A13Q9NSD5 PBX1-209ENST00000485769 834 ntTSL 2 BASIC18.82■□□□□ 0.6
SLC6A13Q9NSD5 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC18.82■□□□□ 0.6
SLC6A13Q9NSD5 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC18.82■□□□□ 0.6
SLC6A13Q9NSD5 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SLC6A13Q9NSD5 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SLC6A13Q9NSD5 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SLC6A13Q9NSD5 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SLC6A13Q9NSD5 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.82■□□□□ 0.6
SLC6A13Q9NSD5 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SLC6A13Q9NSD5 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
SLC6A13Q9NSD5 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC18.81■□□□□ 0.6
SLC6A13Q9NSD5 AC009237.14-201ENST00000609975 1594 ntBASIC18.81■□□□□ 0.6
SLC6A13Q9NSD5 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SLC6A13Q9NSD5 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SLC6A13Q9NSD5 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
SLC6A13Q9NSD5 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SLC6A13Q9NSD5 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SLC6A13Q9NSD5 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SLC6A13Q9NSD5 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SLC6A13Q9NSD5 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SLC6A13Q9NSD5 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SLC6A13Q9NSD5 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC18.81■□□□□ 0.6
SLC6A13Q9NSD5 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC18.81■□□□□ 0.6
SLC6A13Q9NSD5 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC18.81■□□□□ 0.6
SLC6A13Q9NSD5 RARRES2P4-201ENST00000514074 484 ntBASIC18.81■□□□□ 0.6
SLC6A13Q9NSD5 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
SLC6A13Q9NSD5 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC18.81■□□□□ 0.6
SLC6A13Q9NSD5 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SLC6A13Q9NSD5 AC011767.1-201ENST00000617410 1153 ntBASIC18.81■□□□□ 0.6
SLC6A13Q9NSD5 MIR6821-201ENST00000617625 74 ntBASIC18.81■□□□□ 0.6
SLC6A13Q9NSD5 WWOX-218ENST00000627394 894 ntTSL 5 BASIC18.81■□□□□ 0.6
SLC6A13Q9NSD5 KRT8P17-201ENST00000453110 1448 ntBASIC18.81■□□□□ 0.6
SLC6A13Q9NSD5 AC068338.2-201ENST00000563278 1430 ntBASIC18.81■□□□□ 0.6
SLC6A13Q9NSD5 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SLC6A13Q9NSD5 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SLC6A13Q9NSD5 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.81■□□□□ 0.6
SLC6A13Q9NSD5 BX323043.1-201ENST00000641006 1765 ntBASIC18.81■□□□□ 0.6
SLC6A13Q9NSD5 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
SLC6A13Q9NSD5 GAS2L1P2-201ENST00000436355 1356 ntBASIC18.81■□□□□ 0.6
SLC6A13Q9NSD5 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC18.8■□□□□ 0.6
SLC6A13Q9NSD5 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SLC6A13Q9NSD5 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SLC6A13Q9NSD5 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SLC6A13Q9NSD5 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC18.8■□□□□ 0.6
SLC6A13Q9NSD5 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC18.8■□□□□ 0.6
SLC6A13Q9NSD5 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SLC6A13Q9NSD5 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
SLC6A13Q9NSD5 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SLC6A13Q9NSD5 HSCB-202ENST00000398941 955 ntTSL 2 BASIC18.8■□□□□ 0.6
SLC6A13Q9NSD5 KRT18P5-201ENST00000436075 1291 ntBASIC18.8■□□□□ 0.6
SLC6A13Q9NSD5 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC18.8■□□□□ 0.6
SLC6A13Q9NSD5 DUX4L16-201ENST00000555130 1264 ntBASIC18.8■□□□□ 0.6
SLC6A13Q9NSD5 AC137761.2-201ENST00000561729 223 ntBASIC18.8■□□□□ 0.6
SLC6A13Q9NSD5 AC145350.3-201ENST00000569033 163 ntBASIC18.8■□□□□ 0.6
SLC6A13Q9NSD5 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC18.8■□□□□ 0.6
SLC6A13Q9NSD5 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC18.8■□□□□ 0.6
SLC6A13Q9NSD5 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SLC6A13Q9NSD5 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SLC6A13Q9NSD5 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC18.8■□□□□ 0.6
SLC6A13Q9NSD5 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SLC6A13Q9NSD5 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SLC6A13Q9NSD5 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC18.8■□□□□ 0.6
SLC6A13Q9NSD5 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SLC6A13Q9NSD5 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SLC6A13Q9NSD5 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
SLC6A13Q9NSD5 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC18.79■□□□□ 0.6
SLC6A13Q9NSD5 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC18.79■□□□□ 0.6
SLC6A13Q9NSD5 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC18.79■□□□□ 0.6
SLC6A13Q9NSD5 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SLC6A13Q9NSD5 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC18.79■□□□□ 0.6
SLC6A13Q9NSD5 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC18.79■□□□□ 0.6
SLC6A13Q9NSD5 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SLC6A13Q9NSD5 STK25-204ENST00000405585 1643 ntTSL 2 BASIC18.79■□□□□ 0.6
SLC6A13Q9NSD5 GOLGA2P11-201ENST00000562660 1621 ntBASIC18.79■□□□□ 0.6
SLC6A13Q9NSD5 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC18.79■□□□□ 0.6
SLC6A13Q9NSD5 MCRIP2P1-201ENST00000394346 511 ntBASIC18.79■□□□□ 0.6
SLC6A13Q9NSD5 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC18.79■□□□□ 0.6
SLC6A13Q9NSD5 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC18.79■□□□□ 0.6
SLC6A13Q9NSD5 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
SLC6A13Q9NSD5 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC18.79■□□□□ 0.6
SLC6A13Q9NSD5 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SLC6A13Q9NSD5 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SLC6A13Q9NSD5 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC18.79■□□□□ 0.6
SLC6A13Q9NSD5 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SLC6A13Q9NSD5 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.79■□□□□ 0.6
SLC6A13Q9NSD5 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SLC6A13Q9NSD5 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
SLC6A13Q9NSD5 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC18.78■□□□□ 0.6
SLC6A13Q9NSD5 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
SLC6A13Q9NSD5 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SLC6A13Q9NSD5 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC18.78■□□□□ 0.6
SLC6A13Q9NSD5 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms