Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CHMP1AQ9HD42 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CHMP1AQ9HD42 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CHMP1AQ9HD42 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.14■□□□□ 0.33
CHMP1AQ9HD42 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC17.14■□□□□ 0.33
CHMP1AQ9HD42 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC17.14■□□□□ 0.33
CHMP1AQ9HD42 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
CHMP1AQ9HD42 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CHMP1AQ9HD42 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CHMP1AQ9HD42 PTPA-214ENST00000423100 988 ntTSL 2 BASIC17.14■□□□□ 0.33
CHMP1AQ9HD42 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CHMP1AQ9HD42 AC105265.2-201ENST00000467189 838 ntBASIC17.14■□□□□ 0.33
CHMP1AQ9HD42 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CHMP1AQ9HD42 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC17.14■□□□□ 0.33
CHMP1AQ9HD42 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
CHMP1AQ9HD42 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
CHMP1AQ9HD42 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CHMP1AQ9HD42 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CHMP1AQ9HD42 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
CHMP1AQ9HD42 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC17.14■□□□□ 0.33
CHMP1AQ9HD42 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
CHMP1AQ9HD42 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CHMP1AQ9HD42 LINC02228-203ENST00000641970 1355 ntBASIC17.14■□□□□ 0.33
CHMP1AQ9HD42 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CHMP1AQ9HD42 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CHMP1AQ9HD42 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
CHMP1AQ9HD42 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC17.13■□□□□ 0.33
CHMP1AQ9HD42 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CHMP1AQ9HD42 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC17.13■□□□□ 0.33
CHMP1AQ9HD42 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CHMP1AQ9HD42 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CHMP1AQ9HD42 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CHMP1AQ9HD42 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC17.13■□□□□ 0.33
CHMP1AQ9HD42 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.13■□□□□ 0.33
CHMP1AQ9HD42 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
CHMP1AQ9HD42 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CHMP1AQ9HD42 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CHMP1AQ9HD42 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CHMP1AQ9HD42 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CHMP1AQ9HD42 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CHMP1AQ9HD42 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC17.13■□□□□ 0.33
CHMP1AQ9HD42 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
CHMP1AQ9HD42 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CHMP1AQ9HD42 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CHMP1AQ9HD42 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CHMP1AQ9HD42 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
CHMP1AQ9HD42 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
CHMP1AQ9HD42 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC17.13■□□□□ 0.33
CHMP1AQ9HD42 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CHMP1AQ9HD42 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
CHMP1AQ9HD42 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
CHMP1AQ9HD42 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CHMP1AQ9HD42 PKD1P1-201ENST00000458669 6805 ntBASIC17.13■□□□□ 0.33
CHMP1AQ9HD42 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHMP1AQ9HD42 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CHMP1AQ9HD42 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHMP1AQ9HD42 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
CHMP1AQ9HD42 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC17.12■□□□□ 0.33
CHMP1AQ9HD42 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHMP1AQ9HD42 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHMP1AQ9HD42 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHMP1AQ9HD42 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CHMP1AQ9HD42 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC17.12■□□□□ 0.33
CHMP1AQ9HD42 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHMP1AQ9HD42 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC17.12■□□□□ 0.33
CHMP1AQ9HD42 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHMP1AQ9HD42 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHMP1AQ9HD42 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CHMP1AQ9HD42 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHMP1AQ9HD42 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHMP1AQ9HD42 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CHMP1AQ9HD42 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CHMP1AQ9HD42 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC17.12■□□□□ 0.33
CHMP1AQ9HD42 AC104187.1-201ENST00000607510 612 ntBASIC17.12■□□□□ 0.33
CHMP1AQ9HD42 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHMP1AQ9HD42 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHMP1AQ9HD42 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
CHMP1AQ9HD42 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC17.12■□□□□ 0.33
CHMP1AQ9HD42 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC17.12■□□□□ 0.33
CHMP1AQ9HD42 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHMP1AQ9HD42 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CHMP1AQ9HD42 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHMP1AQ9HD42 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHMP1AQ9HD42 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHMP1AQ9HD42 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.11■□□□□ 0.33
CHMP1AQ9HD42 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CHMP1AQ9HD42 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CHMP1AQ9HD42 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CHMP1AQ9HD42 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
CHMP1AQ9HD42 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CHMP1AQ9HD42 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CHMP1AQ9HD42 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CHMP1AQ9HD42 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
CHMP1AQ9HD42 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC17.11■□□□□ 0.33
CHMP1AQ9HD42 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
CHMP1AQ9HD42 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CHMP1AQ9HD42 AC027612.3-201ENST00000413684 1047 ntBASIC17.11■□□□□ 0.33
CHMP1AQ9HD42 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC17.11■□□□□ 0.33
CHMP1AQ9HD42 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC17.11■□□□□ 0.33
CHMP1AQ9HD42 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms