Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM39Q9HCM9 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.8■□□□□ 0.76
TRIM39Q9HCM9 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM39Q9HCM9 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM39Q9HCM9 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM39Q9HCM9 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM39Q9HCM9 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM39Q9HCM9 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
TRIM39Q9HCM9 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
TRIM39Q9HCM9 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.8■□□□□ 0.76
TRIM39Q9HCM9 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM39Q9HCM9 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM39Q9HCM9 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM39Q9HCM9 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM39Q9HCM9 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM39Q9HCM9 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC19.79■□□□□ 0.76
TRIM39Q9HCM9 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
TRIM39Q9HCM9 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM39Q9HCM9 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM39Q9HCM9 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC19.79■□□□□ 0.76
TRIM39Q9HCM9 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM39Q9HCM9 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM39Q9HCM9 KRT17P3-201ENST00000420566 1262 ntBASIC19.79■□□□□ 0.76
TRIM39Q9HCM9 POM121L13P-201ENST00000422362 380 ntBASIC19.79■□□□□ 0.76
TRIM39Q9HCM9 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM39Q9HCM9 HES2-206ENST00000489730 730 ntTSL 2 BASIC19.79■□□□□ 0.76
TRIM39Q9HCM9 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC19.79■□□□□ 0.76
TRIM39Q9HCM9 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
TRIM39Q9HCM9 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.79■□□□□ 0.76
TRIM39Q9HCM9 AC006058.3-201ENST00000606217 1069 ntBASIC19.79■□□□□ 0.76
TRIM39Q9HCM9 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC19.79■□□□□ 0.76
TRIM39Q9HCM9 TMEM191A-211ENST00000637163 1067 ntBASIC19.79■□□□□ 0.76
TRIM39Q9HCM9 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
TRIM39Q9HCM9 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
TRIM39Q9HCM9 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM39Q9HCM9 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM39Q9HCM9 AP005212.1-201ENST00000581547 1997 ntBASIC19.79■□□□□ 0.76
TRIM39Q9HCM9 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM39Q9HCM9 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM39Q9HCM9 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM39Q9HCM9 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM39Q9HCM9 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
TRIM39Q9HCM9 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM39Q9HCM9 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM39Q9HCM9 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC19.78■□□□□ 0.76
TRIM39Q9HCM9 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC19.78■□□□□ 0.76
TRIM39Q9HCM9 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC19.78■□□□□ 0.76
TRIM39Q9HCM9 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.78■□□□□ 0.76
TRIM39Q9HCM9 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM39Q9HCM9 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM39Q9HCM9 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.78■□□□□ 0.76
TRIM39Q9HCM9 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM39Q9HCM9 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC19.78■□□□□ 0.76
TRIM39Q9HCM9 KRT18P29-201ENST00000397031 1267 ntBASIC19.78■□□□□ 0.76
TRIM39Q9HCM9 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC19.78■□□□□ 0.76
TRIM39Q9HCM9 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC19.78■□□□□ 0.76
TRIM39Q9HCM9 KLF2-202ENST00000592003 564 ntTSL 3 BASIC19.78■□□□□ 0.76
TRIM39Q9HCM9 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM39Q9HCM9 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC19.78■□□□□ 0.76
TRIM39Q9HCM9 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM39Q9HCM9 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
TRIM39Q9HCM9 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.78■□□□□ 0.76
TRIM39Q9HCM9 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM39Q9HCM9 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
TRIM39Q9HCM9 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
TRIM39Q9HCM9 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC19.78■□□□□ 0.76
TRIM39Q9HCM9 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM39Q9HCM9 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM39Q9HCM9 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
TRIM39Q9HCM9 SMG8-203ENST00000578922 2178 ntBASIC19.77■□□□□ 0.76
TRIM39Q9HCM9 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TRIM39Q9HCM9 AL157384.1-201ENST00000445995 2473 ntBASIC19.77■□□□□ 0.76
TRIM39Q9HCM9 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
TRIM39Q9HCM9 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TRIM39Q9HCM9 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
TRIM39Q9HCM9 AC128676.1-201ENST00000454392 318 ntBASIC19.77■□□□□ 0.76
TRIM39Q9HCM9 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC19.77■□□□□ 0.76
TRIM39Q9HCM9 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC19.77■□□□□ 0.76
TRIM39Q9HCM9 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC19.77■□□□□ 0.76
TRIM39Q9HCM9 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TRIM39Q9HCM9 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
TRIM39Q9HCM9 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.75
TRIM39Q9HCM9 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.75
TRIM39Q9HCM9 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.77■□□□□ 0.75
TRIM39Q9HCM9 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
TRIM39Q9HCM9 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM39Q9HCM9 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM39Q9HCM9 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM39Q9HCM9 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM39Q9HCM9 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM39Q9HCM9 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM39Q9HCM9 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM39Q9HCM9 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM39Q9HCM9 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC19.76■□□□□ 0.75
TRIM39Q9HCM9 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM39Q9HCM9 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC19.76■□□□□ 0.75
TRIM39Q9HCM9 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC19.76■□□□□ 0.75
TRIM39Q9HCM9 IRX5-204ENST00000560154 879 ntTSL 5 BASIC19.76■□□□□ 0.75
TRIM39Q9HCM9 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC19.76■□□□□ 0.75
TRIM39Q9HCM9 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms