Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC14.96□□□□□ -0.02
LINC00477Q96M19 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
LINC00477Q96M19 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC14.95□□□□□ -0.02
LINC00477Q96M19 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LINC00477Q96M19 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC14.95□□□□□ -0.02
LINC00477Q96M19 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
LINC00477Q96M19 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LINC00477Q96M19 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
LINC00477Q96M19 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
LINC00477Q96M19 BMP1-204ENST00000397814 836 ntTSL 4 BASIC14.95□□□□□ -0.02
LINC00477Q96M19 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC14.95□□□□□ -0.02
LINC00477Q96M19 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC14.95□□□□□ -0.02
LINC00477Q96M19 AC007322.4-201ENST00000509611 723 ntBASIC14.95□□□□□ -0.02
LINC00477Q96M19 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC14.95□□□□□ -0.02
LINC00477Q96M19 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LINC00477Q96M19 AC100791.3-201ENST00000617619 330 ntBASIC14.95□□□□□ -0.02
LINC00477Q96M19 AC013268.1-206ENST00000638368 961 ntBASIC14.95□□□□□ -0.02
LINC00477Q96M19 AC112229.1-201ENST00000639295 961 ntBASIC14.95□□□□□ -0.02
LINC00477Q96M19 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LINC00477Q96M19 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LINC00477Q96M19 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
LINC00477Q96M19 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LINC00477Q96M19 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LINC00477Q96M19 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
LINC00477Q96M19 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LINC00477Q96M19 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LINC00477Q96M19 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC14.95□□□□□ -0.02
LINC00477Q96M19 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
LINC00477Q96M19 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC14.95□□□□□ -0.02
LINC00477Q96M19 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LINC00477Q96M19 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LINC00477Q96M19 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
LINC00477Q96M19 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
LINC00477Q96M19 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC14.94□□□□□ -0.02
LINC00477Q96M19 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC14.94□□□□□ -0.02
LINC00477Q96M19 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
LINC00477Q96M19 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC14.94□□□□□ -0.02
LINC00477Q96M19 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
LINC00477Q96M19 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
LINC00477Q96M19 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LINC00477Q96M19 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
LINC00477Q96M19 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
LINC00477Q96M19 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LINC00477Q96M19 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC14.94□□□□□ -0.02
LINC00477Q96M19 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC14.94□□□□□ -0.02
LINC00477Q96M19 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC14.94□□□□□ -0.02
LINC00477Q96M19 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LINC00477Q96M19 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC14.94□□□□□ -0.02
LINC00477Q96M19 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LINC00477Q96M19 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
LINC00477Q96M19 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
LINC00477Q96M19 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
LINC00477Q96M19 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC14.94□□□□□ -0.02
LINC00477Q96M19 BRI3-207ENST00000539286 699 ntTSL 2 BASIC14.94□□□□□ -0.02
LINC00477Q96M19 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LINC00477Q96M19 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
LINC00477Q96M19 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC14.94□□□□□ -0.02
LINC00477Q96M19 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LINC00477Q96M19 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LINC00477Q96M19 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
LINC00477Q96M19 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
LINC00477Q96M19 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
LINC00477Q96M19 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
LINC00477Q96M19 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC14.94□□□□□ -0.02
LINC00477Q96M19 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LINC00477Q96M19 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LINC00477Q96M19 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LINC00477Q96M19 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC14.93□□□□□ -0.02
LINC00477Q96M19 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
LINC00477Q96M19 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LINC00477Q96M19 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LINC00477Q96M19 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
LINC00477Q96M19 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LINC00477Q96M19 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC14.93□□□□□ -0.02
LINC00477Q96M19 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC14.93□□□□□ -0.02
LINC00477Q96M19 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
LINC00477Q96M19 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LINC00477Q96M19 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LINC00477Q96M19 GUK1-205ENST00000366722 850 ntTSL 3 BASIC14.93□□□□□ -0.02
LINC00477Q96M19 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
LINC00477Q96M19 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
LINC00477Q96M19 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
LINC00477Q96M19 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC14.93□□□□□ -0.02
LINC00477Q96M19 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC14.93□□□□□ -0.02
LINC00477Q96M19 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
LINC00477Q96M19 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LINC00477Q96M19 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC14.93□□□□□ -0.02
LINC00477Q96M19 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LINC00477Q96M19 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
LINC00477Q96M19 STK25-205ENST00000405883 1904 ntTSL 2 BASIC14.93□□□□□ -0.02
LINC00477Q96M19 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
LINC00477Q96M19 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LINC00477Q96M19 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LINC00477Q96M19 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
LINC00477Q96M19 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
LINC00477Q96M19 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
LINC00477Q96M19 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LINC00477Q96M19 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC14.93□□□□□ -0.02
LINC00477Q96M19 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LINC00477Q96M19 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms