Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 AC087632.1-205ENST00000635704 670 ntTSL 37.46□□□□□ -1.224e-14■■□□□ 13.4
DDX55Q8NHQ9 AC087632.1-203ENST00000634318 1033 ntTSL 57.16□□□□□ -1.264e-14■■□□□ 13.4
DDX55Q8NHQ9 AC087632.1-201ENST00000634251 1973 ntTSL 1 (best)6.33□□□□□ -1.44e-14■■□□□ 13.4
DDX55Q8NHQ9 AC087632.1-202ENST00000634847 1821 ntTSL 55.95□□□□□ -1.464e-14■■□□□ 13.4
DDX55Q8NHQ9 AC087632.1-212ENST00000635413 706 ntTSL 55.85□□□□□ -1.474e-14■■□□□ 13.4
DDX55Q8NHQ9 AC087632.1-206ENST00000635605 757 ntTSL 55.39□□□□□ -1.554e-14■■□□□ 13.4
DDX55Q8NHQ9 AC087632.1-214ENST00000635320 568 ntTSL 45.29□□□□□ -1.564e-14■■□□□ 13.4
DDX55Q8NHQ9 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC4.52□□□□□ -1.694e-14■■□□□ 13.4
DDX55Q8NHQ9 AC087632.1-215ENST00000558783 726 ntTSL 54.27□□□□□ -1.734e-14■■□□□ 13.4
DDX55Q8NHQ9 AC087632.1-207ENST00000634529 372 ntTSL 43.61□□□□□ -1.834e-14■■□□□ 13.4
DDX55Q8NHQ9 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC22.01■■□□□ 1.116e-7■■□□□ 13.4
DDX55Q8NHQ9 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.096e-7■■□□□ 13.4
DDX55Q8NHQ9 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC21.44■■□□□ 1.026e-7■■□□□ 13.4
DDX55Q8NHQ9 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC20.08■□□□□ 0.816e-7■■□□□ 13.4
DDX55Q8NHQ9 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.76e-7■■□□□ 13.4
DDX55Q8NHQ9 FGFR1-211ENST00000425967 5375 ntTSL 1 (best) BASIC13.87□□□□□ -0.196e-7■■□□□ 13.4
DDX55Q8NHQ9 TMX2-207ENST00000529403 1697 ntTSL 210.49□□□□□ -0.731e-15■■□□□ 13.4
DDX55Q8NHQ9 TMX2-206ENST00000528110 829 ntTSL 210.3□□□□□ -0.762e-10■■□□□ 13.4
DDX55Q8NHQ9 TMX2-208ENST00000530114 663 ntTSL 39.29□□□□□ -0.922e-10■■□□□ 13.4
DDX55Q8NHQ9 TMX2-201ENST00000278422 1631 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.021e-15■■□□□ 13.4
DDX55Q8NHQ9 TMX2-202ENST00000378312 1521 ntTSL 1 (best) BASIC8.24□□□□□ -1.091e-15■■□□□ 13.4
DDX55Q8NHQ9 CDH2-201ENST00000269141 4332 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.481e-6■■□□□ 13.4
DDX55Q8NHQ9 ADH5-207ENST00000508146 722 ntTSL 414.34□□□□□ -0.112e-6■■□□□ 13.4
DDX55Q8NHQ9 ADH5-211ENST00000512659 822 ntTSL 513.07□□□□□ -0.322e-6■■□□□ 13.4
DDX55Q8NHQ9 ADH5-212ENST00000512991 880 ntTSL 512.75□□□□□ -0.372e-6■■□□□ 13.4
DDX55Q8NHQ9 ADH5-204ENST00000503130 786 ntTSL 311.66□□□□□ -0.542e-6■■□□□ 13.4
DDX55Q8NHQ9 ADH5-208ENST00000508511 1909 ntTSL 211.4□□□□□ -0.582e-6■■□□□ 13.4
DDX55Q8NHQ9 ADH5-203ENST00000502590 697 ntTSL 511.01□□□□□ -0.652e-6■■□□□ 13.4
DDX55Q8NHQ9 ADH5-205ENST00000505652 623 ntTSL 58.79□□□□□ -12e-6■■□□□ 13.4
DDX55Q8NHQ9 GANAB-202ENST00000356638 3608 ntAPPRIS P3 TSL 1 (best) BASIC10.8□□□□□ -0.685e-14■■□□□ 13.3
DDX55Q8NHQ9 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC27.14■■□□□ 1.934e-12■■□□□ 13.3
DDX55Q8NHQ9 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC25.86■■□□□ 1.734e-12■■□□□ 13.3
DDX55Q8NHQ9 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC24.47■■□□□ 1.514e-12■■□□□ 13.3
DDX55Q8NHQ9 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC23.16■■□□□ 1.34e-12■■□□□ 13.3
DDX55Q8NHQ9 DAZAP1-208ENST00000589874 3642 nt14.55□□□□□ -0.084e-12■■□□□ 13.3
DDX55Q8NHQ9 DAZAP1-207ENST00000589484 3414 ntTSL 213.52□□□□□ -0.254e-12■■□□□ 13.3
DDX55Q8NHQ9 DAZAP1-203ENST00000585485 3943 ntTSL 213.34□□□□□ -0.274e-12■■□□□ 13.3
DDX55Q8NHQ9 FAM50A-203ENST00000464419 1470 ntTSL 527.32■■□□□ 1.962e-7■■□□□ 13.3
DDX55Q8NHQ9 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.172e-7■■□□□ 13.3
DDX55Q8NHQ9 ERBB2-221ENST00000584888 500 ntTSL 322.04■■□□□ 1.128e-7■■□□□ 13.3
DDX55Q8NHQ9 PTOV1-211ENST00000598632 1073 ntTSL 225.49■■□□□ 1.671e-11■■□□□ 13.3
DDX55Q8NHQ9 PTOV1-217ENST00000601501 564 ntTSL 219.6■□□□□ 0.731e-11■■□□□ 13.3
DDX55Q8NHQ9 PTOV1-202ENST00000594151 995 ntTSL 517.6■□□□□ 0.411e-11■■□□□ 13.3
DDX55Q8NHQ9 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC24.82■■□□□ 1.569e-26■■□□□ 13.3
DDX55Q8NHQ9 CFL1-202ENST00000524553 860 ntTSL 2 BASIC20.83■□□□□ 0.939e-26■■□□□ 13.3
DDX55Q8NHQ9 MAGED1-206ENST00000473931 950 ntTSL 29.88□□□□□ -0.839e-7■■□□□ 13.3
DDX55Q8NHQ9 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC25.45■■□□□ 1.664e-8■■□□□ 13.3
DDX55Q8NHQ9 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC24.56■■□□□ 1.524e-8■■□□□ 13.3
DDX55Q8NHQ9 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.124e-8■■□□□ 13.3
DDX55Q8NHQ9 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.944e-8■■□□□ 13.3
DDX55Q8NHQ9 DDR1-225ENST00000376568 3894 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.022e-8■■□□□ 13.3
DDX55Q8NHQ9 DDR1-226ENST00000376569 3783 ntAPPRIS P3 TSL 5 BASIC13.2□□□□□ -0.32e-8■■□□□ 13.3
DDX55Q8NHQ9 DDR1-224ENST00000376567 3832 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.342e-8■■□□□ 13.3
DDX55Q8NHQ9 DDR1-238ENST00000446312 3202 ntTSL 5 BASIC12.77□□□□□ -0.372e-8■■□□□ 13.3
DDX55Q8NHQ9 DDR1-232ENST00000418800 3588 ntAPPRIS P3 TSL 2 BASIC12.37□□□□□ -0.432e-8■■□□□ 13.3
DDX55Q8NHQ9 DDR1-223ENST00000324771 4148 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.432e-8■■□□□ 13.3
DDX55Q8NHQ9 DDR1-227ENST00000376570 3820 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.462e-8■■□□□ 13.3
DDX55Q8NHQ9 DDR1-239ENST00000452441 3857 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.552e-8■■□□□ 13.3
DDX55Q8NHQ9 DDR1-240ENST00000454612 3942 ntAPPRIS P3 TSL 5 BASIC11.57□□□□□ -0.562e-8■■□□□ 13.3
DDX55Q8NHQ9 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC27.99■■■□□ 2.072e-8■■□□□ 13.3
DDX55Q8NHQ9 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC26.17■■□□□ 1.782e-8■■□□□ 13.3
DDX55Q8NHQ9 POLR2F-213ENST00000606538 760 ntTSL 2 BASIC15.81■□□□□ 0.122e-8■■□□□ 13.3
DDX55Q8NHQ9 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC20.95■□□□□ 0.947e-15■■□□□ 13.3
DDX55Q8NHQ9 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC19.95■□□□□ 0.787e-15■■□□□ 13.3
DDX55Q8NHQ9 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.297e-15■■□□□ 13.3
DDX55Q8NHQ9 GPX3-206ENST00000521632 1314 ntTSL 519.04■□□□□ 0.648e-15■■□□□ 13.3
DDX55Q8NHQ9 CFB-271ENST00000425368 2862 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.465e-12■■□□□ 13.3
DDX55Q8NHQ9 CFB-280ENST00000482312 764 ntTSL 29.27□□□□□ -0.935e-12■■□□□ 13.3
DDX55Q8NHQ9 CFB-282ENST00000483004 940 ntTSL 58.82□□□□□ -15e-12■■□□□ 13.3
DDX55Q8NHQ9 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.466e-7■■□□□ 13.3
DDX55Q8NHQ9 HGS-203ENST00000570652 523 ntTSL 523.9■■□□□ 1.421e-14■■□□□ 13.3
DDX55Q8NHQ9 CD99-211ENST00000623253 573 ntTSL 1 (best)20.38■□□□□ 0.856e-8■■□□□ 13.3
DDX55Q8NHQ9 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.372e-6■■□□□ 13.3
DDX55Q8NHQ9 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.471e-6■■□□□ 13.3
DDX55Q8NHQ9 TBCB-205ENST00000585746 875 ntTSL 3 BASIC22.26■■□□□ 1.151e-6■■□□□ 13.3
DDX55Q8NHQ9 TBCB-203ENST00000468156 630 ntTSL 222.07■■□□□ 1.121e-6■■□□□ 13.3
DDX55Q8NHQ9 TBCB-207ENST00000586868 466 ntTSL 3 BASIC12.82□□□□□ -0.361e-6■■□□□ 13.3
DDX55Q8NHQ9 MYL6B-209ENST00000551834 562 ntTSL 413.41□□□□□ -0.262e-7■■□□□ 13.2
DDX55Q8NHQ9 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.455e-12■■□□□ 13.2
DDX55Q8NHQ9 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC17.7■□□□□ 0.425e-12■■□□□ 13.2
DDX55Q8NHQ9 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.255e-12■■□□□ 13.2
DDX55Q8NHQ9 SLC38A10-203ENST00000539643 1988 ntTSL 1 (best)19.99■□□□□ 0.797e-6■■□□□ 13.2
DDX55Q8NHQ9 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.127e-6■■□□□ 13.2
DDX55Q8NHQ9 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.047e-6■■□□□ 13.2
DDX55Q8NHQ9 MYL6B-204ENST00000549178 971 ntTSL 514.43□□□□□ -0.13e-7■■□□□ 13.2
DDX55Q8NHQ9 MYL6B-210ENST00000552568 703 ntTSL 5 BASIC14.29□□□□□ -0.123e-7■■□□□ 13.2
DDX55Q8NHQ9 MYL6B-207ENST00000550443 1034 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.123e-7■■□□□ 13.2
DDX55Q8NHQ9 MYL6B-211ENST00000553066 1305 ntAPPRIS P1 TSL 3 BASIC13.95□□□□□ -0.183e-7■■□□□ 13.2
DDX55Q8NHQ9 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.123e-6■■□□□ 13.2
DDX55Q8NHQ9 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC22.02■■□□□ 1.123e-6■■□□□ 13.2
DDX55Q8NHQ9 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.053e-6■■□□□ 13.2
DDX55Q8NHQ9 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.813e-6■■□□□ 13.2
DDX55Q8NHQ9 CIZ1-205ENST00000372948 2858 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.283e-6■■□□□ 13.2
DDX55Q8NHQ9 CIZ1-201ENST00000277465 2742 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.33e-6■■□□□ 13.2
DDX55Q8NHQ9 CIZ1-228ENST00000634901 3462 ntAPPRIS P3 TSL 5 BASIC13.08□□□□□ -0.323e-6■■□□□ 13.2
DDX55Q8NHQ9 CIZ1-225ENST00000538431 2996 ntAPPRIS ALT2 TSL 2 BASIC12.35□□□□□ -0.433e-6■■□□□ 13.2
DDX55Q8NHQ9 CIZ1-207ENST00000393608 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.443e-6■■□□□ 13.2
DDX55Q8NHQ9 CIZ1-208ENST00000415526 2508 ntAPPRIS ALT2 TSL 1 (best)11.14□□□□□ -0.633e-6■■□□□ 13.2
DDX55Q8NHQ9 CIZ1-212ENST00000471773 717 ntTSL 29.32□□□□□ -0.923e-6■■□□□ 13.2
DDX55Q8NHQ9 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.374e-7■■□□□ 13.2
Retrieved 100 of 15,504 protein–RNA pairs in 138 ms