Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC23.14■■□□□ 1.3
KRT40Q6A162 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
KRT40Q6A162 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
KRT40Q6A162 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
KRT40Q6A162 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.29
KRT40Q6A162 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC23.14■■□□□ 1.29
KRT40Q6A162 MIR4758-201ENST00000577688 71 ntBASIC23.14■■□□□ 1.29
KRT40Q6A162 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC23.14■■□□□ 1.29
KRT40Q6A162 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
KRT40Q6A162 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
KRT40Q6A162 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
KRT40Q6A162 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
KRT40Q6A162 BID-204ENST00000399767 2129 ntTSL 2 BASIC23.14■■□□□ 1.29
KRT40Q6A162 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
KRT40Q6A162 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC23.14■■□□□ 1.29
KRT40Q6A162 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
KRT40Q6A162 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
KRT40Q6A162 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
KRT40Q6A162 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC23.13■■□□□ 1.29
KRT40Q6A162 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC23.13■■□□□ 1.29
KRT40Q6A162 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
KRT40Q6A162 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
KRT40Q6A162 RHEB-204ENST00000472642 900 ntTSL 3 BASIC23.13■■□□□ 1.29
KRT40Q6A162 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC23.13■■□□□ 1.29
KRT40Q6A162 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC23.13■■□□□ 1.29
KRT40Q6A162 BRWD1-AS2-201ENST00000603064 1028 ntBASIC23.13■■□□□ 1.29
KRT40Q6A162 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
KRT40Q6A162 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
KRT40Q6A162 KRT8P17-201ENST00000453110 1448 ntBASIC23.13■■□□□ 1.29
KRT40Q6A162 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
KRT40Q6A162 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
KRT40Q6A162 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
KRT40Q6A162 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC23.12■■□□□ 1.29
KRT40Q6A162 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
KRT40Q6A162 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
KRT40Q6A162 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
KRT40Q6A162 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
KRT40Q6A162 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
KRT40Q6A162 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
KRT40Q6A162 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
KRT40Q6A162 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
KRT40Q6A162 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC23.12■■□□□ 1.29
KRT40Q6A162 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC23.12■■□□□ 1.29
KRT40Q6A162 MIPEPP3-201ENST00000412105 444 ntBASIC23.12■■□□□ 1.29
KRT40Q6A162 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC23.12■■□□□ 1.29
KRT40Q6A162 PPP1R14BP2-201ENST00000426284 444 ntBASIC23.12■■□□□ 1.29
KRT40Q6A162 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
KRT40Q6A162 GCSHP5-201ENST00000443090 522 ntBASIC23.12■■□□□ 1.29
KRT40Q6A162 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC23.12■■□□□ 1.29
KRT40Q6A162 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC23.12■■□□□ 1.29
KRT40Q6A162 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC23.12■■□□□ 1.29
KRT40Q6A162 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC23.12■■□□□ 1.29
KRT40Q6A162 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
KRT40Q6A162 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
KRT40Q6A162 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
KRT40Q6A162 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
KRT40Q6A162 NXN-202ENST00000537628 1340 ntTSL 3 BASIC23.11■■□□□ 1.29
KRT40Q6A162 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC23.11■■□□□ 1.29
KRT40Q6A162 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC23.11■■□□□ 1.29
KRT40Q6A162 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC23.11■■□□□ 1.29
KRT40Q6A162 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC23.11■■□□□ 1.29
KRT40Q6A162 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
KRT40Q6A162 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
KRT40Q6A162 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC23.11■■□□□ 1.29
KRT40Q6A162 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC23.11■■□□□ 1.29
KRT40Q6A162 CD37-204ENST00000535669 1674 ntTSL 2 BASIC23.11■■□□□ 1.29
KRT40Q6A162 LBX2-AS1-202ENST00000603175 2083 ntBASIC23.11■■□□□ 1.29
KRT40Q6A162 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
KRT40Q6A162 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC23.11■■□□□ 1.29
KRT40Q6A162 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC23.11■■□□□ 1.29
KRT40Q6A162 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
KRT40Q6A162 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
KRT40Q6A162 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
KRT40Q6A162 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
KRT40Q6A162 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
KRT40Q6A162 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
KRT40Q6A162 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC23.1■■□□□ 1.29
KRT40Q6A162 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC23.1■■□□□ 1.29
KRT40Q6A162 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC23.1■■□□□ 1.29
KRT40Q6A162 AL031963.3-201ENST00000606441 850 ntBASIC23.1■■□□□ 1.29
KRT40Q6A162 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
KRT40Q6A162 AP006294.2-201ENST00000641667 209 ntBASIC23.1■■□□□ 1.29
KRT40Q6A162 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
KRT40Q6A162 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
KRT40Q6A162 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC23.09■■□□□ 1.29
KRT40Q6A162 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
KRT40Q6A162 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC23.09■■□□□ 1.29
KRT40Q6A162 AL158047.1-201ENST00000445918 881 ntBASIC23.09■■□□□ 1.29
KRT40Q6A162 HES2-205ENST00000487437 968 ntTSL 3 BASIC23.09■■□□□ 1.29
KRT40Q6A162 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
KRT40Q6A162 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
KRT40Q6A162 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
KRT40Q6A162 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC23.09■■□□□ 1.29
KRT40Q6A162 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC23.09■■□□□ 1.29
KRT40Q6A162 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
KRT40Q6A162 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
KRT40Q6A162 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
KRT40Q6A162 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC23.08■■□□□ 1.29
KRT40Q6A162 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
KRT40Q6A162 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms