Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC18.97■□□□□ 0.63
LIM2P55344 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIM2P55344 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC18.97■□□□□ 0.63
LIM2P55344 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC18.97■□□□□ 0.63
LIM2P55344 AC099778.1-201ENST00000568593 1911 ntBASIC18.97■□□□□ 0.63
LIM2P55344 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
LIM2P55344 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
LIM2P55344 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
LIM2P55344 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIM2P55344 KRT8P17-201ENST00000453110 1448 ntBASIC18.97■□□□□ 0.63
LIM2P55344 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC18.97■□□□□ 0.63
LIM2P55344 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC18.97■□□□□ 0.63
LIM2P55344 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC18.97■□□□□ 0.63
LIM2P55344 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
LIM2P55344 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIM2P55344 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC18.97■□□□□ 0.63
LIM2P55344 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC18.97■□□□□ 0.63
LIM2P55344 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
LIM2P55344 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIM2P55344 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LIM2P55344 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.96■□□□□ 0.63
LIM2P55344 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIM2P55344 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIM2P55344 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIM2P55344 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIM2P55344 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIM2P55344 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIM2P55344 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC18.96■□□□□ 0.63
LIM2P55344 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC18.96■□□□□ 0.63
LIM2P55344 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LIM2P55344 AL031963.3-201ENST00000606441 850 ntBASIC18.96■□□□□ 0.63
LIM2P55344 HLA-B-256ENST00000639848 1089 ntBASIC18.96■□□□□ 0.63
LIM2P55344 KRT8P20-201ENST00000423953 1409 ntBASIC18.96■□□□□ 0.63
LIM2P55344 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC18.96■□□□□ 0.63
LIM2P55344 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
LIM2P55344 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIM2P55344 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC18.96■□□□□ 0.63
LIM2P55344 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC18.96■□□□□ 0.63
LIM2P55344 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIM2P55344 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIM2P55344 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC18.96■□□□□ 0.63
LIM2P55344 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC18.95■□□□□ 0.62
LIM2P55344 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIM2P55344 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LIM2P55344 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC18.95■□□□□ 0.62
LIM2P55344 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIM2P55344 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC18.95■□□□□ 0.62
LIM2P55344 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
LIM2P55344 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC18.95■□□□□ 0.62
LIM2P55344 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIM2P55344 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIM2P55344 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LIM2P55344 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LIM2P55344 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC18.95■□□□□ 0.62
LIM2P55344 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIM2P55344 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LIM2P55344 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIM2P55344 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
LIM2P55344 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC18.95■□□□□ 0.62
LIM2P55344 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC18.95■□□□□ 0.62
LIM2P55344 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIM2P55344 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC18.95■□□□□ 0.62
LIM2P55344 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
LIM2P55344 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
LIM2P55344 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIM2P55344 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
LIM2P55344 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC18.94■□□□□ 0.62
LIM2P55344 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
LIM2P55344 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
LIM2P55344 AC092368.3-202ENST00000574180 1591 ntBASIC18.94■□□□□ 0.62
LIM2P55344 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIM2P55344 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIM2P55344 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIM2P55344 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIM2P55344 HLA-G-202ENST00000376815 851 ntBASIC18.94■□□□□ 0.62
LIM2P55344 HLA-G-203ENST00000376818 1127 ntBASIC18.94■□□□□ 0.62
LIM2P55344 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC18.94■□□□□ 0.62
LIM2P55344 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
LIM2P55344 AC060766.5-201ENST00000590539 871 ntBASIC18.94■□□□□ 0.62
LIM2P55344 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
LIM2P55344 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
LIM2P55344 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIM2P55344 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC18.94■□□□□ 0.62
LIM2P55344 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC18.94■□□□□ 0.62
LIM2P55344 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
LIM2P55344 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC18.94■□□□□ 0.62
LIM2P55344 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIM2P55344 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIM2P55344 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIM2P55344 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIM2P55344 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
LIM2P55344 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC18.93■□□□□ 0.62
LIM2P55344 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIM2P55344 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC18.93■□□□□ 0.62
LIM2P55344 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC18.93■□□□□ 0.62
LIM2P55344 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC18.93■□□□□ 0.62
LIM2P55344 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC18.93■□□□□ 0.62
LIM2P55344 AC005829.2-201ENST00000571422 1056 ntBASIC18.93■□□□□ 0.62
LIM2P55344 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC18.93■□□□□ 0.62
LIM2P55344 INO80E-214ENST00000620599 515 ntTSL 2 BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms