Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA3P55318 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC14.98□□□□□ -0.01
FOXA3P55318 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC14.98□□□□□ -0.01
FOXA3P55318 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC14.98□□□□□ -0.01
FOXA3P55318 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA3P55318 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA3P55318 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA3P55318 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC14.98□□□□□ -0.01
FOXA3P55318 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA3P55318 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC14.98□□□□□ -0.01
FOXA3P55318 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA3P55318 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA3P55318 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA3P55318 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
FOXA3P55318 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA3P55318 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA3P55318 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
FOXA3P55318 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA3P55318 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA3P55318 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA3P55318 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA3P55318 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA3P55318 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA3P55318 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA3P55318 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA3P55318 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA3P55318 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA3P55318 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC14.97□□□□□ -0.01
FOXA3P55318 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
FOXA3P55318 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA3P55318 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC14.97□□□□□ -0.01
FOXA3P55318 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA3P55318 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA3P55318 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA3P55318 SLC47A1P1-202ENST00000449666 945 ntBASIC14.97□□□□□ -0.01
FOXA3P55318 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC14.97□□□□□ -0.01
FOXA3P55318 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA3P55318 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC14.97□□□□□ -0.01
FOXA3P55318 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC14.97□□□□□ -0.01
FOXA3P55318 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC14.97□□□□□ -0.01
FOXA3P55318 AC136469.2-201ENST00000623944 1028 ntBASIC14.97□□□□□ -0.01
FOXA3P55318 RASSF1-AS1-201ENST00000629828 790 ntBASIC14.97□□□□□ -0.01
FOXA3P55318 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC14.97□□□□□ -0.01
FOXA3P55318 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC14.97□□□□□ -0.01
FOXA3P55318 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA3P55318 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA3P55318 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA3P55318 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
FOXA3P55318 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA3P55318 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA3P55318 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA3P55318 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA3P55318 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA3P55318 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA3P55318 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA3P55318 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC14.96□□□□□ -0.01
FOXA3P55318 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
FOXA3P55318 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
FOXA3P55318 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
FOXA3P55318 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
FOXA3P55318 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
FOXA3P55318 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
FOXA3P55318 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
FOXA3P55318 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
FOXA3P55318 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
FOXA3P55318 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
FOXA3P55318 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
FOXA3P55318 SRD5A1P1-201ENST00000442297 786 ntBASIC14.96□□□□□ -0.01
FOXA3P55318 LTB4R2-202ENST00000528054 3092 ntBASIC14.96□□□□□ -0.01
FOXA3P55318 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
FOXA3P55318 AC133561.4-201ENST00000566112 224 ntBASIC14.96□□□□□ -0.01
FOXA3P55318 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC14.96□□□□□ -0.01
FOXA3P55318 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
FOXA3P55318 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC14.96□□□□□ -0.01
FOXA3P55318 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
FOXA3P55318 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
FOXA3P55318 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC14.96□□□□□ -0.02
FOXA3P55318 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
FOXA3P55318 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.02
FOXA3P55318 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.02
FOXA3P55318 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC14.96□□□□□ -0.02
FOXA3P55318 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC14.95□□□□□ -0.02
FOXA3P55318 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
FOXA3P55318 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
FOXA3P55318 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC14.95□□□□□ -0.02
FOXA3P55318 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
FOXA3P55318 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
FOXA3P55318 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
FOXA3P55318 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
FOXA3P55318 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
FOXA3P55318 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
FOXA3P55318 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
FOXA3P55318 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
FOXA3P55318 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC14.95□□□□□ -0.02
FOXA3P55318 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
FOXA3P55318 PTCHD3P2-201ENST00000424937 1205 ntBASIC14.95□□□□□ -0.02
FOXA3P55318 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
FOXA3P55318 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC14.95□□□□□ -0.02
FOXA3P55318 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
FOXA3P55318 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms