Protein–RNA interactions for Protein: P53621

COPA, Coatomer subunit alpha, humanhuman

Predictions only

Length 1,224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPAP53621 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COPAP53621 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.58■□□□□ 0.89
COPAP53621 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COPAP53621 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
COPAP53621 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC20.58■□□□□ 0.88
COPAP53621 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC20.58■□□□□ 0.88
COPAP53621 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COPAP53621 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
COPAP53621 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
COPAP53621 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COPAP53621 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
COPAP53621 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC20.57■□□□□ 0.88
COPAP53621 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC20.57■□□□□ 0.88
COPAP53621 AL049796.1-201ENST00000565336 1766 ntBASIC20.57■□□□□ 0.88
COPAP53621 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COPAP53621 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.57■□□□□ 0.88
COPAP53621 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
COPAP53621 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
COPAP53621 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC20.57■□□□□ 0.88
COPAP53621 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
COPAP53621 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
COPAP53621 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COPAP53621 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
COPAP53621 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC20.57■□□□□ 0.88
COPAP53621 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COPAP53621 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.57■□□□□ 0.88
COPAP53621 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COPAP53621 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COPAP53621 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
COPAP53621 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COPAP53621 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COPAP53621 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20.56■□□□□ 0.88
COPAP53621 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
COPAP53621 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
COPAP53621 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
COPAP53621 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
COPAP53621 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC20.56■□□□□ 0.88
COPAP53621 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC20.56■□□□□ 0.88
COPAP53621 SERP1-205ENST00000487153 657 ntTSL 4 BASIC20.56■□□□□ 0.88
COPAP53621 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC20.56■□□□□ 0.88
COPAP53621 BRWD1-AS2-201ENST00000603064 1028 ntBASIC20.56■□□□□ 0.88
COPAP53621 FAM197Y4-202ENST00000622692 608 ntBASIC20.56■□□□□ 0.88
COPAP53621 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COPAP53621 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COPAP53621 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COPAP53621 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC20.56■□□□□ 0.88
COPAP53621 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
COPAP53621 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COPAP53621 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20.55■□□□□ 0.88
COPAP53621 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
COPAP53621 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
COPAP53621 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
COPAP53621 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COPAP53621 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COPAP53621 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COPAP53621 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COPAP53621 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC20.55■□□□□ 0.88
COPAP53621 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC20.55■□□□□ 0.88
COPAP53621 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC20.55■□□□□ 0.88
COPAP53621 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC20.55■□□□□ 0.88
COPAP53621 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
COPAP53621 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COPAP53621 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COPAP53621 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
COPAP53621 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COPAP53621 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC20.55■□□□□ 0.88
COPAP53621 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COPAP53621 RNF165-205ENST00000588679 2904 ntBASIC20.54■□□□□ 0.88
COPAP53621 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
COPAP53621 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.54■□□□□ 0.88
COPAP53621 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COPAP53621 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
COPAP53621 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC20.54■□□□□ 0.88
COPAP53621 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COPAP53621 GGT1-206ENST00000404223 952 ntTSL 2 BASIC20.54■□□□□ 0.88
COPAP53621 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC20.54■□□□□ 0.88
COPAP53621 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC20.54■□□□□ 0.88
COPAP53621 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
COPAP53621 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COPAP53621 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC20.54■□□□□ 0.88
COPAP53621 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COPAP53621 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COPAP53621 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COPAP53621 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC20.54■□□□□ 0.88
COPAP53621 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
COPAP53621 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC20.54■□□□□ 0.88
COPAP53621 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COPAP53621 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COPAP53621 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.54■□□□□ 0.88
COPAP53621 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.54■□□□□ 0.88
COPAP53621 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COPAP53621 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COPAP53621 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COPAP53621 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
COPAP53621 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COPAP53621 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COPAP53621 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.53■□□□□ 0.88
COPAP53621 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
COPAP53621 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC20.53■□□□□ 0.88
COPAP53621 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms