Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC20.58■□□□□ 0.89
NEK3P51956 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC20.58■□□□□ 0.89
NEK3P51956 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC20.58■□□□□ 0.89
NEK3P51956 TMEM191A-211ENST00000637163 1067 ntBASIC20.58■□□□□ 0.89
NEK3P51956 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
NEK3P51956 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC20.58■□□□□ 0.88
NEK3P51956 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
NEK3P51956 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC20.58■□□□□ 0.88
NEK3P51956 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
NEK3P51956 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
NEK3P51956 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
NEK3P51956 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC20.58■□□□□ 0.88
NEK3P51956 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.58■□□□□ 0.88
NEK3P51956 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.58■□□□□ 0.88
NEK3P51956 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
NEK3P51956 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
NEK3P51956 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
NEK3P51956 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
NEK3P51956 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
NEK3P51956 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
NEK3P51956 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC20.57■□□□□ 0.88
NEK3P51956 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NEK3P51956 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NEK3P51956 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
NEK3P51956 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
NEK3P51956 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC20.57■□□□□ 0.88
NEK3P51956 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
NEK3P51956 INO80E-214ENST00000620599 515 ntTSL 2 BASIC20.57■□□□□ 0.88
NEK3P51956 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC20.57■□□□□ 0.88
NEK3P51956 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC20.57■□□□□ 0.88
NEK3P51956 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
NEK3P51956 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.57■□□□□ 0.88
NEK3P51956 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NEK3P51956 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NEK3P51956 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
NEK3P51956 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC20.56■□□□□ 0.88
NEK3P51956 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NEK3P51956 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NEK3P51956 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
NEK3P51956 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
NEK3P51956 AC011484.1-201ENST00000377652 1995 ntBASIC20.56■□□□□ 0.88
NEK3P51956 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NEK3P51956 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NEK3P51956 POU5F1P3-201ENST00000428824 1078 ntBASIC20.56■□□□□ 0.88
NEK3P51956 GATS-209ENST00000454084 1030 ntTSL 3 BASIC20.56■□□□□ 0.88
NEK3P51956 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
NEK3P51956 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NEK3P51956 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
NEK3P51956 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
NEK3P51956 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NEK3P51956 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC20.56■□□□□ 0.88
NEK3P51956 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NEK3P51956 NXN-202ENST00000537628 1340 ntTSL 3 BASIC20.55■□□□□ 0.88
NEK3P51956 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NEK3P51956 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
NEK3P51956 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC20.55■□□□□ 0.88
NEK3P51956 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NEK3P51956 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NEK3P51956 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NEK3P51956 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NEK3P51956 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NEK3P51956 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NEK3P51956 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.55■□□□□ 0.88
NEK3P51956 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC20.55■□□□□ 0.88
NEK3P51956 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NEK3P51956 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC20.55■□□□□ 0.88
NEK3P51956 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
NEK3P51956 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC20.55■□□□□ 0.88
NEK3P51956 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC20.55■□□□□ 0.88
NEK3P51956 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC20.55■□□□□ 0.88
NEK3P51956 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC20.55■□□□□ 0.88
NEK3P51956 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
NEK3P51956 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC20.55■□□□□ 0.88
NEK3P51956 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
NEK3P51956 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC20.55■□□□□ 0.88
NEK3P51956 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NEK3P51956 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC20.55■□□□□ 0.88
NEK3P51956 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC20.55■□□□□ 0.88
NEK3P51956 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NEK3P51956 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NEK3P51956 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NEK3P51956 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
NEK3P51956 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NEK3P51956 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NEK3P51956 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC20.54■□□□□ 0.88
NEK3P51956 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC20.54■□□□□ 0.88
NEK3P51956 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NEK3P51956 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NEK3P51956 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
NEK3P51956 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
NEK3P51956 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
NEK3P51956 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NEK3P51956 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NEK3P51956 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NEK3P51956 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NEK3P51956 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NEK3P51956 GAS7-202ENST00000396115 929 ntTSL 5 BASIC20.54■□□□□ 0.88
NEK3P51956 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC20.54■□□□□ 0.88
NEK3P51956 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC20.54■□□□□ 0.88
NEK3P51956 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms