Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HOXA1P49639 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC16.51■□□□□ 0.23
HOXA1P49639 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC16.51■□□□□ 0.23
HOXA1P49639 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC16.51■□□□□ 0.23
HOXA1P49639 DET1-207ENST00000564406 2315 ntTSL 2 BASIC16.51■□□□□ 0.23
HOXA1P49639 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HOXA1P49639 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
HOXA1P49639 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC16.51■□□□□ 0.23
HOXA1P49639 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC16.51■□□□□ 0.23
HOXA1P49639 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC16.51■□□□□ 0.23
HOXA1P49639 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HOXA1P49639 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HOXA1P49639 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
HOXA1P49639 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC16.5■□□□□ 0.23
HOXA1P49639 EXOC3-AS1-202ENST00000623673 1663 ntBASIC16.5■□□□□ 0.23
HOXA1P49639 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HOXA1P49639 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
HOXA1P49639 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
HOXA1P49639 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HOXA1P49639 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC16.5■□□□□ 0.23
HOXA1P49639 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
HOXA1P49639 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HOXA1P49639 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HOXA1P49639 AC096631.2-201ENST00000436136 790 ntBASIC16.5■□□□□ 0.23
HOXA1P49639 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC16.5■□□□□ 0.23
HOXA1P49639 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC16.5■□□□□ 0.23
HOXA1P49639 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC16.5■□□□□ 0.23
HOXA1P49639 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
HOXA1P49639 AC053503.5-201ENST00000601508 636 ntBASIC16.5■□□□□ 0.23
HOXA1P49639 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC16.5■□□□□ 0.23
HOXA1P49639 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HOXA1P49639 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC16.5■□□□□ 0.23
HOXA1P49639 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC16.5■□□□□ 0.23
HOXA1P49639 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC16.5■□□□□ 0.23
HOXA1P49639 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC16.5■□□□□ 0.23
HOXA1P49639 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HOXA1P49639 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.5■□□□□ 0.23
HOXA1P49639 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HOXA1P49639 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HOXA1P49639 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HOXA1P49639 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC16.5■□□□□ 0.23
HOXA1P49639 AL139384.1-201ENST00000612143 3047 ntBASIC16.5■□□□□ 0.23
HOXA1P49639 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HOXA1P49639 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC16.5■□□□□ 0.23
HOXA1P49639 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HOXA1P49639 MFF-207ENST00000409565 1548 ntTSL 2 BASIC16.5■□□□□ 0.23
HOXA1P49639 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HOXA1P49639 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HOXA1P49639 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
HOXA1P49639 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC16.49■□□□□ 0.23
HOXA1P49639 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
HOXA1P49639 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HOXA1P49639 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
HOXA1P49639 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HOXA1P49639 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
HOXA1P49639 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HOXA1P49639 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
HOXA1P49639 MIR572-201ENST00000384983 95 ntBASIC16.49■□□□□ 0.23
HOXA1P49639 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC16.49■□□□□ 0.23
HOXA1P49639 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC16.49■□□□□ 0.23
HOXA1P49639 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HOXA1P49639 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC16.49■□□□□ 0.23
HOXA1P49639 EEF1DP3-203ENST00000566025 782 ntBASIC16.49■□□□□ 0.23
HOXA1P49639 AC061975.6-201ENST00000579045 1553 ntBASIC16.49■□□□□ 0.23
HOXA1P49639 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.49■□□□□ 0.23
HOXA1P49639 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HOXA1P49639 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC16.49■□□□□ 0.23
HOXA1P49639 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
HOXA1P49639 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
HOXA1P49639 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HOXA1P49639 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HOXA1P49639 AC008406.3-201ENST00000620001 1374 ntBASIC16.49■□□□□ 0.23
HOXA1P49639 PCDHB18P-201ENST00000524813 2368 ntBASIC16.49■□□□□ 0.23
HOXA1P49639 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HOXA1P49639 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC16.49■□□□□ 0.23
HOXA1P49639 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC16.49■□□□□ 0.23
HOXA1P49639 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC16.49■□□□□ 0.23
HOXA1P49639 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HOXA1P49639 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC16.48■□□□□ 0.23
HOXA1P49639 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HOXA1P49639 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC16.48■□□□□ 0.23
HOXA1P49639 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC16.48■□□□□ 0.23
HOXA1P49639 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HOXA1P49639 MPST-204ENST00000404393 1329 ntTSL 5 BASIC16.48■□□□□ 0.23
HOXA1P49639 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HOXA1P49639 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HOXA1P49639 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
HOXA1P49639 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HOXA1P49639 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC16.48■□□□□ 0.23
HOXA1P49639 AP001330.3-201ENST00000520123 633 ntBASIC16.48■□□□□ 0.23
HOXA1P49639 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC16.48■□□□□ 0.23
HOXA1P49639 AC008175.2-201ENST00000612840 297 ntBASIC16.48■□□□□ 0.23
HOXA1P49639 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
HOXA1P49639 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC16.48■□□□□ 0.23
HOXA1P49639 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HOXA1P49639 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HOXA1P49639 STAC-204ENST00000457375 1366 ntTSL 2 BASIC16.48■□□□□ 0.23
HOXA1P49639 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HOXA1P49639 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
HOXA1P49639 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms