Protein–RNA interactions for Protein: P35732

DEF1, RNA polymerase II degradation factor 1, yeastyeast

Known RBP Predictions only

Length 738 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
DEF1P35732 YOL083C-AYOL083C-A 141 nt1.71□□□□□ -2.14
DEF1P35732 BIR1YJR089W 2865 nt1.7□□□□□ -2.14
DEF1P35732 CCH1YGR217W 6120 nt1.69□□□□□ -2.14
DEF1P35732 snR14snR14 160 nt1.69□□□□□ -2.14
DEF1P35732 MMS4YBR098W 2076 nt1.69□□□□□ -2.14
DEF1P35732 YAR009CYAR009C 3591 nt1.69□□□□□ -2.14
DEF1P35732 SMC4YLR086W 4257 nt1.69□□□□□ -2.14
DEF1P35732 YLR422WYLR422W 5799 nt1.68□□□□□ -2.14
DEF1P35732 FYV10YIL097W 1551 nt1.68□□□□□ -2.14
DEF1P35732 YLR232WYLR232W 348 nt1.68□□□□□ -2.14
DEF1P35732 SAC3YDR159W 3906 nt1.67□□□□□ -2.14
DEF1P35732 tQ(UUG)E2tQ(UUG)E2 72 nt1.67□□□□□ -2.14
DEF1P35732 NUT1YGL151W 3399 nt1.67□□□□□ -2.14
DEF1P35732 SLX4YLR135W 2247 nt1.66□□□□□ -2.14
DEF1P35732 SEC1YDR164C 2175 nt1.65□□□□□ -2.14
DEF1P35732 GEA2YEL022W 4380 nt1.64□□□□□ -2.15
DEF1P35732 YLR041WYLR041W 321 nt1.64□□□□□ -2.15
DEF1P35732 BRR2YER172C 6492 nt1.64□□□□□ -2.15
DEF1P35732 KIP1YBL063W 3336 nt1.64□□□□□ -2.15
DEF1P35732 EMC5YIL027C 426 nt1.63□□□□□ -2.15
DEF1P35732 YBL071C-BYBL071C-B 99 nt1.63□□□□□ -2.15
DEF1P35732 PAN2YGL094C 3348 nt1.63□□□□□ -2.15
DEF1P35732 ALY2YJL084C 3141 nt1.63□□□□□ -2.15
DEF1P35732 KCS1YDR017C 3153 nt1.63□□□□□ -2.15
DEF1P35732 TRM3YDL112W 4311 nt1.62□□□□□ -2.15
DEF1P35732 MEC1YBR136W 7107 nt1.62□□□□□ -2.15
DEF1P35732 YDR034C-AYDR034C-A 177 nt1.61□□□□□ -2.15
DEF1P35732 YGR146C-AYGR146C-A 162 nt1.61□□□□□ -2.15
DEF1P35732 CFT1YDR301W 4074 nt1.61□□□□□ -2.15
DEF1P35732 RAD9YDR217C 3930 nt1.6□□□□□ -2.15
DEF1P35732 snR190snR190 190 nt1.6□□□□□ -2.15
DEF1P35732 NOP9YJL010C 2001 nt1.6□□□□□ -2.15
DEF1P35732 ANS1YHR126C 480 nt1.59□□□□□ -2.15
DEF1P35732 SKI3YPR189W 4299 nt1.59□□□□□ -2.15
DEF1P35732 STO1YMR125W 2586 nt1.58□□□□□ -2.16
DEF1P35732 PMD1YER132C 5262 nt1.58□□□□□ -2.16
DEF1P35732 NUP192YJL039C 5052 nt1.57□□□□□ -2.16
DEF1P35732 RPL26BYGR034W 384 nt1.56□□□□□ -2.16
DEF1P35732 WAR1YML076C 2835 nt1.56□□□□□ -2.16
DEF1P35732 BST1YFL025C 3090 nt1.55□□□□□ -2.16
DEF1P35732 YBR196C-AYBR196C-A 150 nt1.55□□□□□ -2.16
DEF1P35732 SET3YKR029C 2256 nt1.55□□□□□ -2.16
DEF1P35732 KAP122YGL016W 3246 nt1.53□□□□□ -2.16
DEF1P35732 RPS26AYGL189C 360 nt1.53□□□□□ -2.16
DEF1P35732 YBL100W-CYBL100W-C 120 nt1.53□□□□□ -2.16
DEF1P35732 YOL164W-AYOL164W-A 183 nt1.52□□□□□ -2.17
DEF1P35732 YGR240C-AYGR240C-A 201 nt1.51□□□□□ -2.17
DEF1P35732 ASE1YOR058C 2658 nt1.5□□□□□ -2.17
DEF1P35732 BEM3YPL115C 3387 nt1.48□□□□□ -2.17
DEF1P35732 APL3YBL037W 3078 nt1.47□□□□□ -2.17
DEF1P35732 UBP3YER151C 2739 nt1.47□□□□□ -2.17
DEF1P35732 PRP16YKR086W 3216 nt1.46□□□□□ -2.18
DEF1P35732 YDL073WYDL073W 2955 nt1.46□□□□□ -2.18
DEF1P35732 YBR200W-AYBR200W-A 165 nt1.46□□□□□ -2.18
DEF1P35732 snR47snR47 99 nt1.46□□□□□ -2.18
DEF1P35732 SEC10YLR166C 2616 nt1.46□□□□□ -2.18
DEF1P35732 AZF1YOR113W 2745 nt1.46□□□□□ -2.18
DEF1P35732 TRM732YMR259C 4263 nt1.44□□□□□ -2.18
DEF1P35732 tN(GUU)QtN(GUU)Q 71 nt1.44□□□□□ -2.18
DEF1P35732 YLR286W-AYLR286W-A 135 nt1.43□□□□□ -2.18
DEF1P35732 CAT8YMR280C 4302 nt1.43□□□□□ -2.18
DEF1P35732 NNF2YGR089W 2811 nt1.43□□□□□ -2.18
DEF1P35732 YNL284C-BYNL284C-B 5268 nt1.42□□□□□ -2.18
DEF1P35732 NUP188YML103C 4968 nt1.4□□□□□ -2.18
DEF1P35732 ORC3YLL004W 1851 nt1.4□□□□□ -2.19
DEF1P35732 MSH3YCR092C 3057 nt1.39□□□□□ -2.19
DEF1P35732 EST2YLR318W 2655 nt1.39□□□□□ -2.19
DEF1P35732 SWI4YER111C 3282 nt1.38□□□□□ -2.19
DEF1P35732 SEC8YPR055W 3198 nt1.38□□□□□ -2.19
DEF1P35732 RPM2YML091C 3609 nt1.38□□□□□ -2.19
DEF1P35732 GLG1YKR058W 1851 nt1.37□□□□□ -2.19
DEF1P35732 YPR160W-AYPR160W-A 81 nt1.36□□□□□ -2.19
DEF1P35732 MSN5YDR335W 3675 nt1.36□□□□□ -2.19
DEF1P35732 VAM6YDL077C 3150 nt1.34□□□□□ -2.19
DEF1P35732 snR53snR53 91 nt1.34□□□□□ -2.19
DEF1P35732 SEC3YER008C 4011 nt1.33□□□□□ -2.2
DEF1P35732 NST1YNL091W 3723 nt1.33□□□□□ -2.2
DEF1P35732 tD(GUC)QtD(GUC)Q 75 nt1.33□□□□□ -2.2
DEF1P35732 YLR399W-AYLR399W-A 105 nt1.33□□□□□ -2.2
DEF1P35732 CDC25YLR310C 4770 nt1.33□□□□□ -2.2
DEF1P35732 NUP145YGL092W 3954 nt1.32□□□□□ -2.2
DEF1P35732 MYO1YHR023W 5787 nt1.32□□□□□ -2.2
DEF1P35732 snR64snR64 101 nt1.32□□□□□ -2.2
DEF1P35732 CDC39YCR093W 6327 nt1.31□□□□□ -2.2
DEF1P35732 tH(GUG)E1tH(GUG)E1 72 nt1.31□□□□□ -2.2
DEF1P35732 tH(GUG)E2tH(GUG)E2 72 nt1.31□□□□□ -2.2
DEF1P35732 tH(GUG)G1tH(GUG)G1 72 nt1.31□□□□□ -2.2
DEF1P35732 tH(GUG)G2tH(GUG)G2 72 nt1.31□□□□□ -2.2
DEF1P35732 tH(GUG)HtH(GUG)H 72 nt1.31□□□□□ -2.2
DEF1P35732 tH(GUG)KtH(GUG)K 72 nt1.31□□□□□ -2.2
DEF1P35732 tH(GUG)MtH(GUG)M 72 nt1.31□□□□□ -2.2
DEF1P35732 EST1YLR233C 2100 nt1.3□□□□□ -2.2
DEF1P35732 YLR299C-AYLR299C-A 93 nt1.3□□□□□ -2.2
DEF1P35732 YSP1YHR155W 3687 nt1.29□□□□□ -2.2
DEF1P35732 YCS4YLR272C 3531 nt1.27□□□□□ -2.21
DEF1P35732 snR69snR69 101 nt1.26□□□□□ -2.21
DEF1P35732 CSE1YGL238W 2883 nt1.26□□□□□ -2.21
DEF1P35732 ROM2YLR371W 4071 nt1.25□□□□□ -2.21
DEF1P35732 YDL159C-BYDL159C-B 177 nt1.25□□□□□ -2.21
DEF1P35732 snR50snR50 90 nt1.25□□□□□ -2.21
Retrieved 100 of 7,029 protein–RNA pairs in 26.9 ms