Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
PTPN4P29074 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC19.99■□□□□ 0.79
PTPN4P29074 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
PTPN4P29074 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
PTPN4P29074 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
PTPN4P29074 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
PTPN4P29074 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
PTPN4P29074 SLC29A4P1-201ENST00000398760 971 ntBASIC19.99■□□□□ 0.79
PTPN4P29074 GUSBP6-202ENST00000438529 1198 ntBASIC19.99■□□□□ 0.79
PTPN4P29074 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC19.99■□□□□ 0.79
PTPN4P29074 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC19.99■□□□□ 0.79
PTPN4P29074 SLC7A5P1-201ENST00000568957 537 ntBASIC19.99■□□□□ 0.79
PTPN4P29074 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
PTPN4P29074 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
PTPN4P29074 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
PTPN4P29074 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC19.99■□□□□ 0.79
PTPN4P29074 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC19.99■□□□□ 0.79
PTPN4P29074 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
PTPN4P29074 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PTPN4P29074 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PTPN4P29074 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC19.99■□□□□ 0.79
PTPN4P29074 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
PTPN4P29074 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC19.99■□□□□ 0.79
PTPN4P29074 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC19.99■□□□□ 0.79
PTPN4P29074 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC19.99■□□□□ 0.79
PTPN4P29074 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
PTPN4P29074 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PTPN4P29074 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
PTPN4P29074 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PTPN4P29074 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
PTPN4P29074 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
PTPN4P29074 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.98■□□□□ 0.79
PTPN4P29074 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.98■□□□□ 0.79
PTPN4P29074 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC19.98■□□□□ 0.79
PTPN4P29074 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC19.98■□□□□ 0.79
PTPN4P29074 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
PTPN4P29074 PFKL-212ENST00000628044 129 ntTSL 3 BASIC19.98■□□□□ 0.79
PTPN4P29074 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
PTPN4P29074 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
PTPN4P29074 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PTPN4P29074 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
PTPN4P29074 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
PTPN4P29074 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.97■□□□□ 0.79
PTPN4P29074 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PTPN4P29074 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PTPN4P29074 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PTPN4P29074 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PTPN4P29074 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC19.97■□□□□ 0.79
PTPN4P29074 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
PTPN4P29074 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC19.97■□□□□ 0.79
PTPN4P29074 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
PTPN4P29074 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
PTPN4P29074 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC19.97■□□□□ 0.79
PTPN4P29074 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PTPN4P29074 ABHD17AP1-201ENST00000358206 933 ntBASIC19.97■□□□□ 0.79
PTPN4P29074 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC19.97■□□□□ 0.79
PTPN4P29074 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC19.97■□□□□ 0.79
PTPN4P29074 AF201337.1-201ENST00000520239 748 ntBASIC19.97■□□□□ 0.79
PTPN4P29074 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
PTPN4P29074 CD99P1-205ENST00000527459 561 ntBASIC19.97■□□□□ 0.79
PTPN4P29074 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
PTPN4P29074 AC133552.2-202ENST00000575694 574 ntBASIC19.97■□□□□ 0.79
PTPN4P29074 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC19.97■□□□□ 0.79
PTPN4P29074 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
PTPN4P29074 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
PTPN4P29074 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
PTPN4P29074 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC19.97■□□□□ 0.79
PTPN4P29074 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
PTPN4P29074 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
PTPN4P29074 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
PTPN4P29074 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
PTPN4P29074 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PTPN4P29074 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.96■□□□□ 0.79
PTPN4P29074 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PTPN4P29074 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PTPN4P29074 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC19.96■□□□□ 0.79
PTPN4P29074 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC19.96■□□□□ 0.79
PTPN4P29074 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
PTPN4P29074 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PTPN4P29074 NAA20-201ENST00000310450 920 ntTSL 2 BASIC19.96■□□□□ 0.79
PTPN4P29074 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC19.96■□□□□ 0.79
PTPN4P29074 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC19.96■□□□□ 0.79
PTPN4P29074 AC013268.1-206ENST00000638368 961 ntBASIC19.96■□□□□ 0.79
PTPN4P29074 AC112229.1-201ENST00000639295 961 ntBASIC19.96■□□□□ 0.79
PTPN4P29074 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PTPN4P29074 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
PTPN4P29074 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PTPN4P29074 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PTPN4P29074 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.96■□□□□ 0.79
PTPN4P29074 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PTPN4P29074 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.96■□□□□ 0.79
PTPN4P29074 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PTPN4P29074 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.96■□□□□ 0.79
PTPN4P29074 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC19.95■□□□□ 0.79
PTPN4P29074 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PTPN4P29074 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
PTPN4P29074 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
PTPN4P29074 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
PTPN4P29074 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.95■□□□□ 0.78
PTPN4P29074 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms