Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL9A1P20849 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC20.68■□□□□ 0.9
COL9A1P20849 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.68■□□□□ 0.9
COL9A1P20849 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL9A1P20849 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL9A1P20849 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
COL9A1P20849 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL9A1P20849 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL9A1P20849 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL9A1P20849 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL9A1P20849 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC20.67■□□□□ 0.9
COL9A1P20849 HOTTIP_1.1-201ENST00000620415 57 ntBASIC20.67■□□□□ 0.9
COL9A1P20849 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC20.67■□□□□ 0.9
COL9A1P20849 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL9A1P20849 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL9A1P20849 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC20.67■□□□□ 0.9
COL9A1P20849 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL9A1P20849 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL9A1P20849 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL9A1P20849 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL9A1P20849 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL9A1P20849 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL9A1P20849 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL9A1P20849 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL9A1P20849 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL9A1P20849 AC116562.2-201ENST00000507042 360 ntBASIC20.66■□□□□ 0.9
COL9A1P20849 SDHD-206ENST00000528182 754 ntTSL 3 BASIC20.66■□□□□ 0.9
COL9A1P20849 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC20.66■□□□□ 0.9
COL9A1P20849 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL9A1P20849 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC20.66■□□□□ 0.9
COL9A1P20849 AC116407.4-201ENST00000623319 1061 ntBASIC20.66■□□□□ 0.9
COL9A1P20849 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.66■□□□□ 0.9
COL9A1P20849 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL9A1P20849 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL9A1P20849 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL9A1P20849 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL9A1P20849 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.66■□□□□ 0.9
COL9A1P20849 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL9A1P20849 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL9A1P20849 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL9A1P20849 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL9A1P20849 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.65■□□□□ 0.9
COL9A1P20849 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.65■□□□□ 0.9
COL9A1P20849 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL9A1P20849 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL9A1P20849 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
COL9A1P20849 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL9A1P20849 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL9A1P20849 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.65■□□□□ 0.9
COL9A1P20849 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL9A1P20849 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL9A1P20849 BET1L-202ENST00000332865 533 ntTSL 5 BASIC20.65■□□□□ 0.9
COL9A1P20849 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC20.65■□□□□ 0.9
COL9A1P20849 RPP21-221ENST00000428040 594 ntTSL 2 BASIC20.65■□□□□ 0.9
COL9A1P20849 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC20.65■□□□□ 0.9
COL9A1P20849 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL9A1P20849 FAAHP1-202ENST00000446499 1238 ntBASIC20.65■□□□□ 0.9
COL9A1P20849 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC20.65■□□□□ 0.9
COL9A1P20849 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC20.65■□□□□ 0.9
COL9A1P20849 SERP1-205ENST00000487153 657 ntTSL 4 BASIC20.65■□□□□ 0.9
COL9A1P20849 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC20.65■□□□□ 0.9
COL9A1P20849 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC20.65■□□□□ 0.9
COL9A1P20849 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL9A1P20849 AC117500.6-201ENST00000624871 588 ntBASIC20.65■□□□□ 0.9
COL9A1P20849 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL9A1P20849 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
COL9A1P20849 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
COL9A1P20849 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20.64■□□□□ 0.89
COL9A1P20849 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL9A1P20849 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
COL9A1P20849 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC20.64■□□□□ 0.89
COL9A1P20849 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL9A1P20849 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL9A1P20849 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
COL9A1P20849 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC20.64■□□□□ 0.89
COL9A1P20849 EGLN1P1-201ENST00000531623 762 ntBASIC20.64■□□□□ 0.89
COL9A1P20849 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC20.64■□□□□ 0.89
COL9A1P20849 AC111152.3-201ENST00000569699 673 ntBASIC20.64■□□□□ 0.89
COL9A1P20849 AC005829.2-201ENST00000571422 1056 ntBASIC20.64■□□□□ 0.89
COL9A1P20849 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
COL9A1P20849 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC20.64■□□□□ 0.89
COL9A1P20849 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.63■□□□□ 0.89
COL9A1P20849 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL9A1P20849 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL9A1P20849 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL9A1P20849 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COL9A1P20849 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.63■□□□□ 0.89
COL9A1P20849 AC005332.1-201ENST00000577698 1310 ntBASIC20.63■□□□□ 0.89
COL9A1P20849 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COL9A1P20849 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COL9A1P20849 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC20.63■□□□□ 0.89
COL9A1P20849 AL671277.2-201ENST00000458060 996 ntBASIC20.63■□□□□ 0.89
COL9A1P20849 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC20.63■□□□□ 0.89
COL9A1P20849 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC20.63■□□□□ 0.89
COL9A1P20849 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.63■□□□□ 0.89
COL9A1P20849 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COL9A1P20849 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.62■□□□□ 0.89
COL9A1P20849 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL9A1P20849 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL9A1P20849 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms