Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 AL359075.1-203ENST00000462729 1002 ntBASIC28.37■■■□□ 2.13
NPHP4O75161 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC28.37■■■□□ 2.13
NPHP4O75161 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC28.37■■■□□ 2.13
NPHP4O75161 AC010653.2-201ENST00000623505 997 ntBASIC28.37■■■□□ 2.13
NPHP4O75161 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC28.37■■■□□ 2.13
NPHP4O75161 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC28.37■■■□□ 2.13
NPHP4O75161 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
NPHP4O75161 AC011484.1-201ENST00000377652 1995 ntBASIC28.37■■■□□ 2.13
NPHP4O75161 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC28.37■■■□□ 2.13
NPHP4O75161 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
NPHP4O75161 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
NPHP4O75161 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
NPHP4O75161 HLA-G-202ENST00000376815 851 ntBASIC28.36■■■□□ 2.13
NPHP4O75161 HLA-G-203ENST00000376818 1127 ntBASIC28.36■■■□□ 2.13
NPHP4O75161 HOMER2P1-201ENST00000455653 964 ntBASIC28.36■■■□□ 2.13
NPHP4O75161 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
NPHP4O75161 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC28.36■■■□□ 2.13
NPHP4O75161 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
NPHP4O75161 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
NPHP4O75161 AC096733.2-201ENST00000609937 1394 ntBASIC28.36■■■□□ 2.13
NPHP4O75161 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
NPHP4O75161 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC28.35■■■□□ 2.13
NPHP4O75161 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
NPHP4O75161 AC246785.2-201ENST00000432512 513 ntBASIC28.35■■■□□ 2.13
NPHP4O75161 AC007663.1-201ENST00000438948 1240 ntBASIC28.35■■■□□ 2.13
NPHP4O75161 CCR12P-201ENST00000446203 998 ntBASIC28.35■■■□□ 2.13
NPHP4O75161 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC28.35■■■□□ 2.13
NPHP4O75161 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC28.35■■■□□ 2.13
NPHP4O75161 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC28.35■■■□□ 2.13
NPHP4O75161 CYGB-204ENST00000589342 815 ntTSL 3 BASIC28.35■■■□□ 2.13
NPHP4O75161 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
NPHP4O75161 AC130371.2-201ENST00000619443 611 ntBASIC28.35■■■□□ 2.13
NPHP4O75161 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC28.35■■■□□ 2.13
NPHP4O75161 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
NPHP4O75161 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC28.35■■■□□ 2.13
NPHP4O75161 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
NPHP4O75161 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC28.35■■■□□ 2.13
NPHP4O75161 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC28.35■■■□□ 2.13
NPHP4O75161 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
NPHP4O75161 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC28.35■■■□□ 2.13
NPHP4O75161 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC28.35■■■□□ 2.13
NPHP4O75161 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC28.35■■■□□ 2.13
NPHP4O75161 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC28.35■■■□□ 2.13
NPHP4O75161 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC28.35■■■□□ 2.13
NPHP4O75161 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
NPHP4O75161 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC28.34■■■□□ 2.13
NPHP4O75161 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC28.34■■■□□ 2.13
NPHP4O75161 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC28.34■■■□□ 2.13
NPHP4O75161 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
NPHP4O75161 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC28.34■■■□□ 2.13
NPHP4O75161 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC28.34■■■□□ 2.13
NPHP4O75161 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC28.34■■■□□ 2.13
NPHP4O75161 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC28.34■■■□□ 2.13
NPHP4O75161 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC28.34■■■□□ 2.13
NPHP4O75161 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
NPHP4O75161 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
NPHP4O75161 MFAP1P1-201ENST00000442257 1255 ntBASIC28.34■■■□□ 2.13
NPHP4O75161 AC131212.4-201ENST00000623606 975 ntBASIC28.34■■■□□ 2.13
NPHP4O75161 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
NPHP4O75161 RCC2P6-201ENST00000526625 1557 ntBASIC28.34■■■□□ 2.13
NPHP4O75161 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC28.33■■■□□ 2.13
NPHP4O75161 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
NPHP4O75161 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC28.33■■■□□ 2.13
NPHP4O75161 SLC25A1P2-201ENST00000430693 912 ntBASIC28.33■■■□□ 2.13
NPHP4O75161 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC28.33■■■□□ 2.13
NPHP4O75161 IRF5-214ENST00000613821 595 ntTSL 5 BASIC28.33■■■□□ 2.13
NPHP4O75161 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC28.33■■■□□ 2.13
NPHP4O75161 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC28.33■■■□□ 2.13
NPHP4O75161 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC28.32■■■□□ 2.12
NPHP4O75161 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
NPHP4O75161 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
NPHP4O75161 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
NPHP4O75161 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
NPHP4O75161 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC28.32■■■□□ 2.12
NPHP4O75161 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
NPHP4O75161 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
NPHP4O75161 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC28.32■■■□□ 2.12
NPHP4O75161 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
NPHP4O75161 AC008622.2-201ENST00000617006 1229 ntBASIC28.32■■■□□ 2.12
NPHP4O75161 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC28.32■■■□□ 2.12
NPHP4O75161 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC28.32■■■□□ 2.12
NPHP4O75161 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC28.32■■■□□ 2.12
NPHP4O75161 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC28.31■■■□□ 2.12
NPHP4O75161 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC28.31■■■□□ 2.12
NPHP4O75161 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
NPHP4O75161 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC28.31■■■□□ 2.12
NPHP4O75161 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC28.31■■■□□ 2.12
NPHP4O75161 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC28.31■■■□□ 2.12
NPHP4O75161 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC28.31■■■□□ 2.12
NPHP4O75161 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
NPHP4O75161 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC28.31■■■□□ 2.12
NPHP4O75161 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
NPHP4O75161 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC28.31■■■□□ 2.12
NPHP4O75161 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC28.31■■■□□ 2.12
NPHP4O75161 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC28.3■■■□□ 2.12
NPHP4O75161 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC28.3■■■□□ 2.12
NPHP4O75161 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC28.3■■■□□ 2.12
NPHP4O75161 DAP-202ENST00000432074 1048 ntTSL 2 BASIC28.3■■■□□ 2.12
NPHP4O75161 PVRIG2P-201ENST00000435460 978 ntBASIC28.3■■■□□ 2.12
NPHP4O75161 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC28.3■■■□□ 2.12
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms