Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 PARP1-210ENST00000629232 477 ntTSL 5 BASIC18.05■□□□□ 0.48
SSX4O60224 AC125437.2-201ENST00000625180 2167 ntBASIC18.05■□□□□ 0.48
SSX4O60224 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SSX4O60224 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SSX4O60224 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC18.05■□□□□ 0.48
SSX4O60224 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC18.05■□□□□ 0.48
SSX4O60224 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC18.05■□□□□ 0.48
SSX4O60224 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SSX4O60224 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC18.04■□□□□ 0.48
SSX4O60224 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC18.04■□□□□ 0.48
SSX4O60224 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SSX4O60224 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC18.04■□□□□ 0.48
SSX4O60224 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
SSX4O60224 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SSX4O60224 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SSX4O60224 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SSX4O60224 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC18.04■□□□□ 0.48
SSX4O60224 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC18.04■□□□□ 0.48
SSX4O60224 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC18.04■□□□□ 0.48
SSX4O60224 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
SSX4O60224 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SSX4O60224 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
SSX4O60224 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
SSX4O60224 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC18.04■□□□□ 0.48
SSX4O60224 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
SSX4O60224 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SSX4O60224 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC18.03■□□□□ 0.48
SSX4O60224 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SSX4O60224 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SSX4O60224 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SSX4O60224 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
SSX4O60224 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SSX4O60224 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC18.03■□□□□ 0.48
SSX4O60224 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SSX4O60224 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.03■□□□□ 0.48
SSX4O60224 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SSX4O60224 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
SSX4O60224 METTL15-202ENST00000403099 795 ntTSL 5 BASIC18.03■□□□□ 0.48
SSX4O60224 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC18.03■□□□□ 0.48
SSX4O60224 AC010141.2-201ENST00000452426 721 ntBASIC18.03■□□□□ 0.48
SSX4O60224 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC18.03■□□□□ 0.48
SSX4O60224 AC142086.2-201ENST00000569753 217 ntBASIC18.03■□□□□ 0.48
SSX4O60224 PFKL-212ENST00000628044 129 ntTSL 3 BASIC18.03■□□□□ 0.48
SSX4O60224 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC18.03■□□□□ 0.48
SSX4O60224 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
SSX4O60224 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC18.03■□□□□ 0.48
SSX4O60224 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SSX4O60224 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
SSX4O60224 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SSX4O60224 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SSX4O60224 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SSX4O60224 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SSX4O60224 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SSX4O60224 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SSX4O60224 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
SSX4O60224 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
SSX4O60224 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.02■□□□□ 0.48
SSX4O60224 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SSX4O60224 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SSX4O60224 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SSX4O60224 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SSX4O60224 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SSX4O60224 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SSX4O60224 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SSX4O60224 BMP1-204ENST00000397814 836 ntTSL 4 BASIC18.02■□□□□ 0.48
SSX4O60224 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC18.02■□□□□ 0.48
SSX4O60224 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC18.02■□□□□ 0.48
SSX4O60224 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SSX4O60224 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SSX4O60224 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
SSX4O60224 OAS3-207ENST00000551007 998 ntTSL 2 BASIC18.02■□□□□ 0.48
SSX4O60224 SLC7A5P2-201ENST00000553010 536 ntBASIC18.02■□□□□ 0.48
SSX4O60224 AL034346.1-201ENST00000568244 1277 ntBASIC18.02■□□□□ 0.48
SSX4O60224 AC138907.5-202ENST00000569484 235 ntBASIC18.02■□□□□ 0.48
SSX4O60224 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SSX4O60224 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC18.02■□□□□ 0.48
SSX4O60224 TFG-210ENST00000620299 1289 ntTSL 5 BASIC18.02■□□□□ 0.48
SSX4O60224 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
SSX4O60224 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC18.02■□□□□ 0.47
SSX4O60224 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
SSX4O60224 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
SSX4O60224 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
SSX4O60224 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
SSX4O60224 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC18.01■□□□□ 0.47
SSX4O60224 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
SSX4O60224 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SSX4O60224 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC18.01■□□□□ 0.47
SSX4O60224 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
SSX4O60224 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SSX4O60224 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SSX4O60224 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
SSX4O60224 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SSX4O60224 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC18.01■□□□□ 0.47
SSX4O60224 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SSX4O60224 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC18.01■□□□□ 0.47
SSX4O60224 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
SSX4O60224 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
SSX4O60224 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SSX4O60224 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC18.01■□□□□ 0.47
SSX4O60224 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms