Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 DCAF1-203ENST00000504652 5951 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
CUX1P39880 EIF4B-201ENST00000262056 4148 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
CUX1P39880 KIAA1671-202ENST00000401395 6386 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
CUX1P39880 AC025040.2-201ENST00000558657 1852 ntBASIC11.6□□□□□ -0.55
CUX1P39880 ASNSP6-201ENST00000592770 1618 ntBASIC11.6□□□□□ -0.55
CUX1P39880 ZKSCAN1-201ENST00000324306 9418 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CUX1P39880 U3.52-201ENST00000384034 216 ntBASIC11.6□□□□□ -0.55
CUX1P39880 AC005008.2-201ENST00000431501 715 ntTSL 3 BASIC11.6□□□□□ -0.55
CUX1P39880 AC090568.1-201ENST00000509499 856 ntBASIC11.6□□□□□ -0.55
CUX1P39880 AC146944.3-201ENST00000509969 371 ntBASIC11.6□□□□□ -0.55
CUX1P39880 AC125612.1-201ENST00000547580 377 ntBASIC11.6□□□□□ -0.55
CUX1P39880 AC097717.1-225ENST00000600829 709 ntTSL 5 BASIC11.6□□□□□ -0.55
CUX1P39880 MTERF4-222ENST00000614476 4524 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CUX1P39880 EPHA6-204ENST00000502694 1582 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
CUX1P39880 DENND2C-201ENST00000393274 6163 ntTSL 5 BASIC11.59□□□□□ -0.55
CUX1P39880 LDB3-201ENST00000263066 3873 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
CUX1P39880 ABLIM3-201ENST00000309868 4326 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CUX1P39880 CALML4-208ENST00000540479 4603 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
CUX1P39880 PHLPP2-206ENST00000568954 8317 ntAPPRIS P2 TSL 1 (best) BASIC11.59□□□□□ -0.55
CUX1P39880 ZNF182-202ENST00000396965 3586 ntAPPRIS P4 TSL 2 BASIC11.59□□□□□ -0.55
CUX1P39880 SEC16A-203ENST00000313050 8806 ntAPPRIS P3 TSL 2 BASIC11.59□□□□□ -0.55
CUX1P39880 TMEM230-204ENST00000379277 1536 ntAPPRIS P1 TSL 3 BASIC11.59□□□□□ -0.55
CUX1P39880 PDXDC1-201ENST00000325823 1113 ntTSL 5 BASIC11.59□□□□□ -0.55
CUX1P39880 SNORA70.3-201ENST00000365075 132 ntBASIC11.59□□□□□ -0.55
CUX1P39880 IGLV3-16-201ENST00000390311 385 ntAPPRIS P1 BASIC11.59□□□□□ -0.55
CUX1P39880 PPP1R7-203ENST00000401987 820 ntTSL 3 BASIC11.59□□□□□ -0.55
CUX1P39880 LINC00433-201ENST00000424165 888 ntTSL 2 BASIC11.59□□□□□ -0.55
CUX1P39880 RN7SL413P-201ENST00000482700 297 ntBASIC11.59□□□□□ -0.55
CUX1P39880 AC006487.2-201ENST00000503624 577 ntTSL 4 BASIC11.59□□□□□ -0.55
CUX1P39880 RNA5SP441-201ENST00000516809 88 ntBASIC11.59□□□□□ -0.55
CUX1P39880 AC018442.2-201ENST00000523658 648 ntTSL 3 BASIC11.59□□□□□ -0.55
CUX1P39880 LINC02457-201ENST00000552992 596 ntTSL 4 BASIC11.59□□□□□ -0.55
CUX1P39880 LINC02207-201ENST00000554530 1256 ntTSL 5 BASIC11.59□□□□□ -0.55
CUX1P39880 AC092123.1-202ENST00000565310 405 ntTSL 3 BASIC11.59□□□□□ -0.55
CUX1P39880 AP005202.2-201ENST00000582386 658 ntTSL 3 BASIC11.59□□□□□ -0.55
CUX1P39880 CBLN2-208ENST00000584764 543 ntTSL 4 BASIC11.59□□□□□ -0.55
CUX1P39880 AMY2A-204ENST00000622339 1862 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
CUX1P39880 INTS4-209ENST00000534064 3156 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CUX1P39880 BTBD3-215ENST00000618918 4486 ntAPPRIS ALT1 TSL 4 BASIC11.59□□□□□ -0.55
CUX1P39880 SEC31B-201ENST00000370345 4612 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CUX1P39880 VIRMA-202ENST00000421249 3924 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
CUX1P39880 HKR1-201ENST00000324411 2929 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.55
CUX1P39880 AL162726.3-201ENST00000637606 1301 ntTSL 5 BASIC11.59□□□□□ -0.55
CUX1P39880 RBFOX1-203ENST00000355637 3321 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
CUX1P39880 MROH3P-202ENST00000635940 2556 ntTSL 5 BASIC11.58□□□□□ -0.56
CUX1P39880 MGC15885-201ENST00000558940 2425 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
CUX1P39880 RBPJ-214ENST00000507561 1689 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
CUX1P39880 MAGEB10-202ENST00000614159 1389 ntAPPRIS P1 BASIC11.58□□□□□ -0.56
CUX1P39880 BDNF-213ENST00000525950 3829 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CUX1P39880 ATG13-201ENST00000359513 4348 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
CUX1P39880 CEP152-202ENST00000380950 5635 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
CUX1P39880 LIMS1-203ENST00000393310 4392 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
CUX1P39880 VNN3-202ENST00000367927 1717 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CUX1P39880 AP2B1-213ENST00000612116 3483 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
CUX1P39880 AC002384.1-203ENST00000602761 3049 ntTSL 3 BASIC11.58□□□□□ -0.56
CUX1P39880 DAPL1-201ENST00000309950 552 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
CUX1P39880 RNA5SP77-201ENST00000365394 120 ntBASIC11.58□□□□□ -0.56
CUX1P39880 DAPL1-203ENST00000409042 544 ntTSL 4 BASIC11.58□□□□□ -0.56
CUX1P39880 LINC00222-203ENST00000416890 602 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
CUX1P39880 AL365356.3-201ENST00000427341 657 ntTSL 3 BASIC11.58□□□□□ -0.56
CUX1P39880 ZEB2-AS1-203ENST00000428623 436 ntTSL 2 BASIC11.58□□□□□ -0.56
CUX1P39880 PSMD10P2-201ENST00000432890 672 ntBASIC11.58□□□□□ -0.56
CUX1P39880 AL020997.1-201ENST00000446554 349 ntBASIC11.58□□□□□ -0.56
CUX1P39880 LINC01093-201ENST00000506479 634 ntTSL 3 BASIC11.58□□□□□ -0.56
CUX1P39880 AC008957.1-202ENST00000512329 681 ntTSL 3 BASIC11.58□□□□□ -0.56
CUX1P39880 SNORA74.1-201ENST00000516320 180 ntBASIC11.58□□□□□ -0.56
CUX1P39880 IGKV3D-34-201ENST00000522638 302 ntBASIC11.58□□□□□ -0.56
CUX1P39880 FOXG1-AS1-203ENST00000551395 602 ntTSL 4 BASIC11.58□□□□□ -0.56
CUX1P39880 AL161757.3-201ENST00000555316 807 ntTSL 3 BASIC11.58□□□□□ -0.56
CUX1P39880 ZNF174-204ENST00000572544 1002 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
CUX1P39880 AC004232.2-201ENST00000574245 821 ntBASIC11.58□□□□□ -0.56
CUX1P39880 CTSLP2-201ENST00000580501 394 ntBASIC11.58□□□□□ -0.56
CUX1P39880 AC010325.2-201ENST00000594114 260 ntTSL 3 BASIC11.58□□□□□ -0.56
CUX1P39880 PEG10-206ENST00000612941 6392 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
CUX1P39880 PEG10-209ENST00000617526 6392 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
CUX1P39880 MTAP-201ENST00000380172 6122 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CUX1P39880 AP4S1-211ENST00000616371 4595 ntAPPRIS P1 TSL 2 BASIC11.58□□□□□ -0.56
CUX1P39880 MAPK10-379ENST00000642013 1385 ntBASIC11.57□□□□□ -0.56
CUX1P39880 ADGRE1-201ENST00000250572 2939 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
CUX1P39880 EPB41L2-228ENST00000531410 2926 ntTSL 5 BASIC11.57□□□□□ -0.56
CUX1P39880 GPR156-201ENST00000315843 4193 ntAPPRIS P3 TSL 1 (best) BASIC11.57□□□□□ -0.56
CUX1P39880 CCDC62-203ENST00000392440 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
CUX1P39880 LSM5-208ENST00000450169 2258 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
CUX1P39880 TP63-207ENST00000418709 2810 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
CUX1P39880 SYNJ1-202ENST00000382491 6958 ntTSL 5 BASIC11.57□□□□□ -0.56
CUX1P39880 AC021054.1-201ENST00000537514 2338 ntTSL 2 BASIC11.57□□□□□ -0.56
CUX1P39880 TMCC1P1-201ENST00000518897 1980 ntBASIC11.57□□□□□ -0.56
CUX1P39880 GTF2IP12-202ENST00000634317 5052 ntTSL 5 BASIC11.57□□□□□ -0.56
CUX1P39880 PRKAA1-201ENST00000296800 1134 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
CUX1P39880 RNA5SP321-201ENST00000362722 111 ntBASIC11.57□□□□□ -0.56
CUX1P39880 RN7SKP275-201ENST00000364626 301 ntBASIC11.57□□□□□ -0.56
CUX1P39880 AL035422.1-201ENST00000414193 397 ntBASIC11.57□□□□□ -0.56
CUX1P39880 AL512363.1-201ENST00000425089 586 ntTSL 2 BASIC11.57□□□□□ -0.56
CUX1P39880 LINC02522-201ENST00000431401 256 ntTSL 3 BASIC11.57□□□□□ -0.56
CUX1P39880 PDE4DIP-208ENST00000464103 1055 ntTSL 5 BASIC11.57□□□□□ -0.56
CUX1P39880 MGAT4D-201ENST00000503109 1281 ntAPPRIS ALT2 TSL 5 BASIC11.57□□□□□ -0.56
CUX1P39880 LINC02384-207ENST00000542875 551 ntTSL 4 BASIC11.57□□□□□ -0.56
CUX1P39880 ZNF790-AS1-201ENST00000587278 653 ntTSL 5 BASIC11.57□□□□□ -0.56
CUX1P39880 AL035422.2-201ENST00000603059 565 ntBASIC11.57□□□□□ -0.56
CUX1P39880 AC004908.1-201ENST00000606572 541 ntBASIC11.57□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 83.6 ms