Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 TRIM6-205ENST00000445329 2951 ntTSL 1 (best) BASIC8.8□□□□□ -1
CHMP4CQ96CF2 CDY1-201ENST00000306609 2321 ntTSL 1 (best) BASIC8.8□□□□□ -1
CHMP4CQ96CF2 CDY1B-201ENST00000306882 2321 ntTSL 1 (best) BASIC8.8□□□□□ -1
CHMP4CQ96CF2 ZNF540-206ENST00000589117 2349 ntAPPRIS ALT2 TSL 1 (best) BASIC8.8□□□□□ -1
CHMP4CQ96CF2 TLR10-201ENST00000308973 3958 ntAPPRIS P1 TSL 5 BASIC8.8□□□□□ -1
CHMP4CQ96CF2 RBMX2P2-201ENST00000257020 946 ntBASIC8.8□□□□□ -1
CHMP4CQ96CF2 CTSL3P-201ENST00000354530 657 ntTSL 1 (best) BASIC8.8□□□□□ -1
CHMP4CQ96CF2 RN7SKP211-201ENST00000363328 315 ntBASIC8.8□□□□□ -1
CHMP4CQ96CF2 NXT2-204ENST00000372107 937 ntTSL 3 BASIC8.8□□□□□ -1
CHMP4CQ96CF2 NUS1P4-201ENST00000401550 585 ntBASIC8.8□□□□□ -1
CHMP4CQ96CF2 RPSAP1-201ENST00000421328 880 ntBASIC8.8□□□□□ -1
CHMP4CQ96CF2 RPL6P2-201ENST00000425480 783 ntBASIC8.8□□□□□ -1
CHMP4CQ96CF2 CASC6-201ENST00000437768 733 ntTSL 1 (best) BASIC8.8□□□□□ -1
CHMP4CQ96CF2 AC005040.1-201ENST00000437783 482 ntBASIC8.8□□□□□ -1
CHMP4CQ96CF2 AC091730.1-201ENST00000440455 692 ntTSL 3 BASIC8.8□□□□□ -1
CHMP4CQ96CF2 LIN28AP2-201ENST00000445283 458 ntBASIC8.8□□□□□ -1
CHMP4CQ96CF2 AC114928.1-201ENST00000446516 415 ntBASIC8.8□□□□□ -1
CHMP4CQ96CF2 AL772337.3-201ENST00000447524 452 ntTSL 3 BASIC8.8□□□□□ -1
CHMP4CQ96CF2 AC012493.1-201ENST00000453252 760 ntBASIC8.8□□□□□ -1
CHMP4CQ96CF2 AC015820.1-201ENST00000473882 321 ntBASIC8.8□□□□□ -1
CHMP4CQ96CF2 AC113383.1-205ENST00000502253 792 ntTSL 2 BASIC8.8□□□□□ -1
CHMP4CQ96CF2 MRPL49P1-201ENST00000505951 535 ntBASIC8.8□□□□□ -1
CHMP4CQ96CF2 CASP1P2-201ENST00000526830 1258 ntBASIC8.8□□□□□ -1
CHMP4CQ96CF2 AC013283.1-201ENST00000557282 492 ntBASIC8.8□□□□□ -1
CHMP4CQ96CF2 AC093283.1-201ENST00000565306 1075 ntBASIC8.8□□□□□ -1
CHMP4CQ96CF2 AC005884.2-201ENST00000593107 247 ntTSL 5 BASIC8.8□□□□□ -1
CHMP4CQ96CF2 AC005154.6-201ENST00000598361 687 ntAPPRIS P1 TSL 5 BASIC8.8□□□□□ -1
CHMP4CQ96CF2 AC097376.1-201ENST00000602907 997 ntBASIC8.8□□□□□ -1
CHMP4CQ96CF2 AL022238.3-201ENST00000609279 443 ntBASIC8.8□□□□□ -1
CHMP4CQ96CF2 AC006335.3-201ENST00000613408 292 ntBASIC8.8□□□□□ -1
CHMP4CQ96CF2 AC092683.1-202ENST00000620023 754 ntTSL 3 BASIC8.8□□□□□ -1
CHMP4CQ96CF2 AC159540.2-201ENST00000621110 754 ntTSL 3 BASIC8.8□□□□□ -1
CHMP4CQ96CF2 AC002094.5-201ENST00000623773 629 ntBASIC8.8□□□□□ -1
CHMP4CQ96CF2 ADGRL3-207ENST00000507625 4843 ntAPPRIS ALT2 TSL 5 BASIC8.8□□□□□ -1
CHMP4CQ96CF2 BBOX1-201ENST00000263182 1886 ntAPPRIS P1 TSL 5 BASIC8.8□□□□□ -1
CHMP4CQ96CF2 UG0898H09-202ENST00000623646 7040 ntBASIC8.8□□□□□ -1
CHMP4CQ96CF2 BRWD1-203ENST00000342449 12929 ntTSL 1 (best) BASIC8.8□□□□□ -1
CHMP4CQ96CF2 AC004014.2-201ENST00000623718 5122 ntBASIC8.8□□□□□ -1
CHMP4CQ96CF2 KIAA0586-201ENST00000261244 4807 ntAPPRIS P3 TSL 1 (best) BASIC8.8□□□□□ -1
CHMP4CQ96CF2 PTPRT-209ENST00000612229 11285 ntTSL 5 BASIC8.8□□□□□ -1
CHMP4CQ96CF2 AL157713.1-201ENST00000379752 1531 ntBASIC8.8□□□□□ -1
CHMP4CQ96CF2 CDH12-201ENST00000382254 4164 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
CHMP4CQ96CF2 C10orf67-204ENST00000636213 3981 ntAPPRIS ALT2 TSL 5 BASIC8.8□□□□□ -1
CHMP4CQ96CF2 NSUN4-208ENST00000498008 3867 ntTSL 2 BASIC8.8□□□□□ -1
CHMP4CQ96CF2 CHD2-208ENST00000626874 7764 ntTSL 1 (best) BASIC8.79□□□□□ -1
CHMP4CQ96CF2 P3H2-203ENST00000427335 2963 ntTSL 1 (best) BASIC8.79□□□□□ -1
CHMP4CQ96CF2 CAST-228ENST00000509903 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC8.79□□□□□ -1
CHMP4CQ96CF2 SAMD3-204ENST00000439090 2093 ntAPPRIS P1 TSL 2 BASIC8.79□□□□□ -1
CHMP4CQ96CF2 HEATR9-207ENST00000604834 1974 ntAPPRIS P3 TSL 1 (best) BASIC8.79□□□□□ -1
CHMP4CQ96CF2 KIAA1210-201ENST00000402510 7824 ntAPPRIS P1 TSL 5 BASIC8.79□□□□□ -1
CHMP4CQ96CF2 UNC5D-201ENST00000287272 8662 ntTSL 5 BASIC8.79□□□□□ -1
CHMP4CQ96CF2 POGZ-218ENST00000531094 4415 ntAPPRIS ALT1 TSL 2 BASIC8.79□□□□□ -1
CHMP4CQ96CF2 G3BP2-203ENST00000395719 4217 ntAPPRIS P4 TSL 1 (best) BASIC8.79□□□□□ -1
CHMP4CQ96CF2 PIP-201ENST00000291009 585 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
CHMP4CQ96CF2 COX7B2-202ENST00000396533 617 ntAPPRIS P2 TSL 1 (best) BASIC8.79□□□□□ -1
CHMP4CQ96CF2 S100B-203ENST00000397648 839 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
CHMP4CQ96CF2 SNORA2C-201ENST00000408564 137 ntBASIC8.79□□□□□ -1
CHMP4CQ96CF2 RN7SKP225-201ENST00000410405 352 ntBASIC8.79□□□□□ -1
CHMP4CQ96CF2 PPP2R2DP1-201ENST00000420526 637 ntBASIC8.79□□□□□ -1
CHMP4CQ96CF2 AC092646.1-201ENST00000427142 901 ntBASIC8.79□□□□□ -1
CHMP4CQ96CF2 CBWD5-209ENST00000430059 1242 ntTSL 1 (best) BASIC8.79□□□□□ -1
CHMP4CQ96CF2 NIP7P1-201ENST00000433227 512 ntBASIC8.79□□□□□ -1
CHMP4CQ96CF2 AL450384.2-202ENST00000436485 656 ntTSL 3 BASIC8.79□□□□□ -1
CHMP4CQ96CF2 CR391992.1-201ENST00000438601 394 ntBASIC8.79□□□□□ -1
CHMP4CQ96CF2 SYNJ2-IT1-201ENST00000442328 599 ntTSL 3 BASIC8.79□□□□□ -1
CHMP4CQ96CF2 AC114488.2-222ENST00000445166 362 ntTSL 3 BASIC8.79□□□□□ -1
CHMP4CQ96CF2 VN1R96P-201ENST00000446052 858 ntBASIC8.79□□□□□ -1
CHMP4CQ96CF2 AC099786.1-201ENST00000446238 670 ntTSL 1 (best) BASIC8.79□□□□□ -1
CHMP4CQ96CF2 AL451074.4-201ENST00000447545 470 ntBASIC8.79□□□□□ -1
CHMP4CQ96CF2 TRBV5-4-201ENST00000454561 544 ntAPPRIS P1 BASIC8.79□□□□□ -1
CHMP4CQ96CF2 CMAHP-203ENST00000458373 1101 ntTSL 5 BASIC8.79□□□□□ -1
CHMP4CQ96CF2 RN7SL791P-201ENST00000467868 295 ntBASIC8.79□□□□□ -1
CHMP4CQ96CF2 CEACAMP3-202ENST00000483806 638 ntBASIC8.79□□□□□ -1
CHMP4CQ96CF2 LINC02217-201ENST00000505844 687 ntTSL 2 BASIC8.79□□□□□ -1
CHMP4CQ96CF2 AC098487.1-204ENST00000506972 610 ntTSL 3 BASIC8.79□□□□□ -1
CHMP4CQ96CF2 RNU2-45P-201ENST00000516068 187 ntBASIC8.79□□□□□ -1
CHMP4CQ96CF2 AC090539.2-201ENST00000523425 671 ntBASIC8.79□□□□□ -1
CHMP4CQ96CF2 AC122688.2-201ENST00000543922 585 ntTSL 3 BASIC8.79□□□□□ -1
CHMP4CQ96CF2 CPM-202ENST00000546373 2116 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
CHMP4CQ96CF2 AC092368.2-201ENST00000565911 600 ntBASIC8.79□□□□□ -1
CHMP4CQ96CF2 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC8.79□□□□□ -1
CHMP4CQ96CF2 NUTM2B-AS1-209ENST00000596088 366 ntTSL 3 BASIC8.79□□□□□ -1
CHMP4CQ96CF2 AL353729.2-201ENST00000605859 1249 ntBASIC8.79□□□□□ -1
CHMP4CQ96CF2 FRG2MP-201ENST00000613317 856 ntBASIC8.79□□□□□ -1
CHMP4CQ96CF2 AC020658.4-201ENST00000613987 684 ntBASIC8.79□□□□□ -1
CHMP4CQ96CF2 AC243830.2-201ENST00000618067 630 ntBASIC8.79□□□□□ -1
CHMP4CQ96CF2 PART1_3.1-201ENST00000619680 131 ntBASIC8.79□□□□□ -1
CHMP4CQ96CF2 CHST12-201ENST00000258711 15979 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
CHMP4CQ96CF2 PSEN1-201ENST00000324501 6078 ntAPPRIS P4 TSL 1 (best) BASIC8.79□□□□□ -1
CHMP4CQ96CF2 GAPVD1-207ENST00000394105 5207 ntAPPRIS P3 TSL 5 BASIC8.79□□□□□ -1
CHMP4CQ96CF2 WNK3-203ENST00000375169 11172 ntAPPRIS ALT1 TSL 5 BASIC8.79□□□□□ -1
CHMP4CQ96CF2 ALPK2-201ENST00000361673 7303 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
CHMP4CQ96CF2 CLSTN2-201ENST00000458420 14202 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
CHMP4CQ96CF2 POU2F3-201ENST00000260264 2903 ntTSL 2 BASIC8.79□□□□□ -1
CHMP4CQ96CF2 FADS2P1-201ENST00000611807 1446 ntBASIC8.79□□□□□ -1
CHMP4CQ96CF2 GDPD4-202ENST00000376217 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC8.79□□□□□ -1
CHMP4CQ96CF2 WDR89-202ENST00000394942 2993 ntAPPRIS P1 TSL 5 BASIC8.79□□□□□ -1
CHMP4CQ96CF2 MUM1L1-201ENST00000337685 4308 ntAPPRIS P1 TSL 3 BASIC8.78□□□□□ -1
CHMP4CQ96CF2 SENP1-201ENST00000448372 4679 ntAPPRIS P2 TSL 1 (best) BASIC8.78□□□□□ -1
CHMP4CQ96CF2 PPFIBP1-202ENST00000318304 6001 ntTSL 1 (best) BASIC8.78□□□□□ -1
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms