Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 AC233263.1-201ENST00000578059 224 ntBASIC21■□□□□ 0.95
USP3Q9Y6I4 AC069544.1-201ENST00000609399 999 ntBASIC21■□□□□ 0.95
USP3Q9Y6I4 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC21■□□□□ 0.95
USP3Q9Y6I4 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
USP3Q9Y6I4 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
USP3Q9Y6I4 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21■□□□□ 0.95
USP3Q9Y6I4 SMG8-203ENST00000578922 2178 ntBASIC21■□□□□ 0.95
USP3Q9Y6I4 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC21■□□□□ 0.95
USP3Q9Y6I4 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC21■□□□□ 0.95
USP3Q9Y6I4 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC21■□□□□ 0.95
USP3Q9Y6I4 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
USP3Q9Y6I4 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
USP3Q9Y6I4 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
USP3Q9Y6I4 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
USP3Q9Y6I4 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC20.99■□□□□ 0.95
USP3Q9Y6I4 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC20.99■□□□□ 0.95
USP3Q9Y6I4 IRX5-204ENST00000560154 879 ntTSL 5 BASIC20.99■□□□□ 0.95
USP3Q9Y6I4 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC20.99■□□□□ 0.95
USP3Q9Y6I4 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
USP3Q9Y6I4 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
USP3Q9Y6I4 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
USP3Q9Y6I4 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
USP3Q9Y6I4 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
USP3Q9Y6I4 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
USP3Q9Y6I4 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC20.98■□□□□ 0.95
USP3Q9Y6I4 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
USP3Q9Y6I4 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.98■□□□□ 0.95
USP3Q9Y6I4 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
USP3Q9Y6I4 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
USP3Q9Y6I4 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
USP3Q9Y6I4 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
USP3Q9Y6I4 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
USP3Q9Y6I4 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC20.98■□□□□ 0.95
USP3Q9Y6I4 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC20.98■□□□□ 0.95
USP3Q9Y6I4 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC20.98■□□□□ 0.95
USP3Q9Y6I4 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC20.98■□□□□ 0.95
USP3Q9Y6I4 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
USP3Q9Y6I4 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC20.98■□□□□ 0.95
USP3Q9Y6I4 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC20.98■□□□□ 0.95
USP3Q9Y6I4 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC20.98■□□□□ 0.95
USP3Q9Y6I4 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC20.98■□□□□ 0.95
USP3Q9Y6I4 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
USP3Q9Y6I4 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.98■□□□□ 0.95
USP3Q9Y6I4 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
USP3Q9Y6I4 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
USP3Q9Y6I4 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
USP3Q9Y6I4 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC20.98■□□□□ 0.95
USP3Q9Y6I4 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
USP3Q9Y6I4 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC20.97■□□□□ 0.95
USP3Q9Y6I4 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP3Q9Y6I4 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP3Q9Y6I4 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP3Q9Y6I4 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP3Q9Y6I4 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
USP3Q9Y6I4 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP3Q9Y6I4 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP3Q9Y6I4 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
USP3Q9Y6I4 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP3Q9Y6I4 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
USP3Q9Y6I4 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP3Q9Y6I4 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
USP3Q9Y6I4 AC098590.1-201ENST00000468126 897 ntBASIC20.97■□□□□ 0.95
USP3Q9Y6I4 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC20.97■□□□□ 0.95
USP3Q9Y6I4 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
USP3Q9Y6I4 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC20.97■□□□□ 0.95
USP3Q9Y6I4 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
USP3Q9Y6I4 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP3Q9Y6I4 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC20.97■□□□□ 0.95
USP3Q9Y6I4 RN7SL471P-201ENST00000580476 299 ntBASIC20.97■□□□□ 0.95
USP3Q9Y6I4 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP3Q9Y6I4 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP3Q9Y6I4 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
USP3Q9Y6I4 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC20.97■□□□□ 0.95
USP3Q9Y6I4 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC20.97■□□□□ 0.95
USP3Q9Y6I4 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
USP3Q9Y6I4 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP3Q9Y6I4 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
USP3Q9Y6I4 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC20.96■□□□□ 0.95
USP3Q9Y6I4 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP3Q9Y6I4 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC20.96■□□□□ 0.95
USP3Q9Y6I4 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC20.96■□□□□ 0.95
USP3Q9Y6I4 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.96■□□□□ 0.95
USP3Q9Y6I4 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
USP3Q9Y6I4 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
USP3Q9Y6I4 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
USP3Q9Y6I4 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP3Q9Y6I4 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP3Q9Y6I4 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
USP3Q9Y6I4 RPS2P52-201ENST00000469610 820 ntBASIC20.96■□□□□ 0.95
USP3Q9Y6I4 THEM4-205ENST00000489410 643 ntTSL 2 BASIC20.96■□□□□ 0.95
USP3Q9Y6I4 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC20.96■□□□□ 0.95
USP3Q9Y6I4 MTDHP1-201ENST00000605323 784 ntBASIC20.96■□□□□ 0.95
USP3Q9Y6I4 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP3Q9Y6I4 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP3Q9Y6I4 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
USP3Q9Y6I4 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
USP3Q9Y6I4 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
USP3Q9Y6I4 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.96■□□□□ 0.95
USP3Q9Y6I4 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP3Q9Y6I4 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms