Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CUEDC1Q9NWM3 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
CUEDC1Q9NWM3 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CUEDC1Q9NWM3 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CUEDC1Q9NWM3 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CUEDC1Q9NWM3 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC19.36■□□□□ 0.69
CUEDC1Q9NWM3 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
CUEDC1Q9NWM3 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CUEDC1Q9NWM3 MOK-233ENST00000524214 1539 ntTSL 2 BASIC19.35■□□□□ 0.69
CUEDC1Q9NWM3 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CUEDC1Q9NWM3 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.35■□□□□ 0.69
CUEDC1Q9NWM3 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CUEDC1Q9NWM3 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CUEDC1Q9NWM3 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
CUEDC1Q9NWM3 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CUEDC1Q9NWM3 CRK-204ENST00000574295 1391 ntTSL 5 BASIC19.35■□□□□ 0.69
CUEDC1Q9NWM3 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CUEDC1Q9NWM3 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.35■□□□□ 0.69
CUEDC1Q9NWM3 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CUEDC1Q9NWM3 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CUEDC1Q9NWM3 RNA5SP413-201ENST00000516373 109 ntBASIC19.35■□□□□ 0.69
CUEDC1Q9NWM3 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC19.35■□□□□ 0.69
CUEDC1Q9NWM3 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.35■□□□□ 0.69
CUEDC1Q9NWM3 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC19.35■□□□□ 0.69
CUEDC1Q9NWM3 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CUEDC1Q9NWM3 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.35■□□□□ 0.69
CUEDC1Q9NWM3 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CUEDC1Q9NWM3 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CUEDC1Q9NWM3 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
CUEDC1Q9NWM3 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
CUEDC1Q9NWM3 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
CUEDC1Q9NWM3 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CUEDC1Q9NWM3 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CUEDC1Q9NWM3 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CUEDC1Q9NWM3 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CUEDC1Q9NWM3 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
CUEDC1Q9NWM3 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.34■□□□□ 0.69
CUEDC1Q9NWM3 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CUEDC1Q9NWM3 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CUEDC1Q9NWM3 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC19.34■□□□□ 0.69
CUEDC1Q9NWM3 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
CUEDC1Q9NWM3 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CUEDC1Q9NWM3 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CUEDC1Q9NWM3 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CUEDC1Q9NWM3 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CUEDC1Q9NWM3 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
CUEDC1Q9NWM3 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
CUEDC1Q9NWM3 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC19.34■□□□□ 0.69
CUEDC1Q9NWM3 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CUEDC1Q9NWM3 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC19.34■□□□□ 0.69
CUEDC1Q9NWM3 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
CUEDC1Q9NWM3 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CUEDC1Q9NWM3 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.34■□□□□ 0.69
CUEDC1Q9NWM3 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CUEDC1Q9NWM3 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC19.34■□□□□ 0.69
CUEDC1Q9NWM3 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
CUEDC1Q9NWM3 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.69
CUEDC1Q9NWM3 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
CUEDC1Q9NWM3 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CUEDC1Q9NWM3 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CUEDC1Q9NWM3 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CUEDC1Q9NWM3 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CUEDC1Q9NWM3 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CUEDC1Q9NWM3 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC19.33■□□□□ 0.68
CUEDC1Q9NWM3 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CUEDC1Q9NWM3 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC19.33■□□□□ 0.68
CUEDC1Q9NWM3 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC19.33■□□□□ 0.68
CUEDC1Q9NWM3 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC19.33■□□□□ 0.68
CUEDC1Q9NWM3 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC19.33■□□□□ 0.68
CUEDC1Q9NWM3 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
CUEDC1Q9NWM3 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CUEDC1Q9NWM3 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
CUEDC1Q9NWM3 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CUEDC1Q9NWM3 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC19.33■□□□□ 0.68
CUEDC1Q9NWM3 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.32■□□□□ 0.68
CUEDC1Q9NWM3 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CUEDC1Q9NWM3 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
CUEDC1Q9NWM3 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.32■□□□□ 0.68
CUEDC1Q9NWM3 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC19.32■□□□□ 0.68
CUEDC1Q9NWM3 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.32■□□□□ 0.68
CUEDC1Q9NWM3 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
CUEDC1Q9NWM3 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CUEDC1Q9NWM3 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CUEDC1Q9NWM3 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC19.32■□□□□ 0.68
CUEDC1Q9NWM3 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CUEDC1Q9NWM3 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC19.32■□□□□ 0.68
CUEDC1Q9NWM3 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC19.32■□□□□ 0.68
CUEDC1Q9NWM3 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC19.32■□□□□ 0.68
CUEDC1Q9NWM3 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC19.32■□□□□ 0.68
CUEDC1Q9NWM3 RPS2P52-201ENST00000469610 820 ntBASIC19.32■□□□□ 0.68
CUEDC1Q9NWM3 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC19.32■□□□□ 0.68
CUEDC1Q9NWM3 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CUEDC1Q9NWM3 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CUEDC1Q9NWM3 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CUEDC1Q9NWM3 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CUEDC1Q9NWM3 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.32■□□□□ 0.68
CUEDC1Q9NWM3 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CUEDC1Q9NWM3 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CUEDC1Q9NWM3 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CUEDC1Q9NWM3 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms