Protein–RNA interactions for Protein: Q9NUG4

CCM2L, Cerebral cavernous malformations 2 protein-like, humanhuman

Predicted RBP Predictions only

Length 571 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2LQ9NUG4 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.63
CCM2LQ9NUG4 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CCM2LQ9NUG4 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CCM2LQ9NUG4 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCM2LQ9NUG4 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCM2LQ9NUG4 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC19.01■□□□□ 0.63
CCM2LQ9NUG4 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.01■□□□□ 0.63
CCM2LQ9NUG4 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
CCM2LQ9NUG4 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
CCM2LQ9NUG4 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCM2LQ9NUG4 MAP2K4P1-201ENST00000438453 1195 ntBASIC19.01■□□□□ 0.63
CCM2LQ9NUG4 AC006970.2-201ENST00000450065 779 ntBASIC19.01■□□□□ 0.63
CCM2LQ9NUG4 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC19.01■□□□□ 0.63
CCM2LQ9NUG4 AC105233.4-201ENST00000642045 216 ntBASIC19.01■□□□□ 0.63
CCM2LQ9NUG4 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CCM2LQ9NUG4 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCM2LQ9NUG4 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCM2LQ9NUG4 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.01■□□□□ 0.63
CCM2LQ9NUG4 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCM2LQ9NUG4 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC19.01■□□□□ 0.63
CCM2LQ9NUG4 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCM2LQ9NUG4 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.01■□□□□ 0.63
CCM2LQ9NUG4 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.01■□□□□ 0.63
CCM2LQ9NUG4 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCM2LQ9NUG4 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
CCM2LQ9NUG4 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCM2LQ9NUG4 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCM2LQ9NUG4 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCM2LQ9NUG4 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCM2LQ9NUG4 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCM2LQ9NUG4 GALNS-213ENST00000569433 723 ntTSL 3 BASIC19■□□□□ 0.63
CCM2LQ9NUG4 AL109923.1-201ENST00000618799 583 ntBASIC19■□□□□ 0.63
CCM2LQ9NUG4 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC19■□□□□ 0.63
CCM2LQ9NUG4 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCM2LQ9NUG4 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
CCM2LQ9NUG4 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCM2LQ9NUG4 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCM2LQ9NUG4 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCM2LQ9NUG4 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
CCM2LQ9NUG4 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCM2LQ9NUG4 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCM2LQ9NUG4 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19■□□□□ 0.63
CCM2LQ9NUG4 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCM2LQ9NUG4 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCM2LQ9NUG4 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.99■□□□□ 0.63
CCM2LQ9NUG4 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCM2LQ9NUG4 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC18.99■□□□□ 0.63
CCM2LQ9NUG4 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
CCM2LQ9NUG4 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC18.99■□□□□ 0.63
CCM2LQ9NUG4 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCM2LQ9NUG4 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC18.99■□□□□ 0.63
CCM2LQ9NUG4 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCM2LQ9NUG4 DBI-210ENST00000542275 757 ntTSL 5 BASIC18.99■□□□□ 0.63
CCM2LQ9NUG4 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC18.99■□□□□ 0.63
CCM2LQ9NUG4 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC18.99■□□□□ 0.63
CCM2LQ9NUG4 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC18.99■□□□□ 0.63
CCM2LQ9NUG4 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
CCM2LQ9NUG4 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC18.99■□□□□ 0.63
CCM2LQ9NUG4 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC18.99■□□□□ 0.63
CCM2LQ9NUG4 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC18.99■□□□□ 0.63
CCM2LQ9NUG4 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCM2LQ9NUG4 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCM2LQ9NUG4 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.99■□□□□ 0.63
CCM2LQ9NUG4 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.99■□□□□ 0.63
CCM2LQ9NUG4 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC18.99■□□□□ 0.63
CCM2LQ9NUG4 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCM2LQ9NUG4 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCM2LQ9NUG4 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCM2LQ9NUG4 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCM2LQ9NUG4 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.99■□□□□ 0.63
CCM2LQ9NUG4 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
CCM2LQ9NUG4 Z82202.1-201ENST00000623446 1880 ntBASIC18.99■□□□□ 0.63
CCM2LQ9NUG4 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCM2LQ9NUG4 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCM2LQ9NUG4 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CCM2LQ9NUG4 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCM2LQ9NUG4 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCM2LQ9NUG4 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
CCM2LQ9NUG4 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCM2LQ9NUG4 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
CCM2LQ9NUG4 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CCM2LQ9NUG4 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.98■□□□□ 0.63
CCM2LQ9NUG4 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CCM2LQ9NUG4 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC18.98■□□□□ 0.63
CCM2LQ9NUG4 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC18.98■□□□□ 0.63
CCM2LQ9NUG4 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCM2LQ9NUG4 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC18.98■□□□□ 0.63
CCM2LQ9NUG4 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC18.98■□□□□ 0.63
CCM2LQ9NUG4 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC18.98■□□□□ 0.63
CCM2LQ9NUG4 KRT18P61-201ENST00000585825 1298 ntBASIC18.98■□□□□ 0.63
CCM2LQ9NUG4 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC18.98■□□□□ 0.63
CCM2LQ9NUG4 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CCM2LQ9NUG4 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC18.98■□□□□ 0.63
CCM2LQ9NUG4 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCM2LQ9NUG4 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC18.98■□□□□ 0.63
CCM2LQ9NUG4 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCM2LQ9NUG4 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCM2LQ9NUG4 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCM2LQ9NUG4 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
CCM2LQ9NUG4 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms