Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
USP42Q9H9J4 TREX2-204ENST00000370212 861 ntTSL 5 BASIC25.58■■□□□ 1.69
USP42Q9H9J4 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC25.58■■□□□ 1.69
USP42Q9H9J4 AC005521.1-201ENST00000393351 872 ntBASIC25.58■■□□□ 1.69
USP42Q9H9J4 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC25.58■■□□□ 1.69
USP42Q9H9J4 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
USP42Q9H9J4 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC25.58■■□□□ 1.69
USP42Q9H9J4 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC25.58■■□□□ 1.68
USP42Q9H9J4 AC005229.4-201ENST00000610085 2198 ntBASIC25.58■■□□□ 1.68
USP42Q9H9J4 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC25.57■■□□□ 1.68
USP42Q9H9J4 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
USP42Q9H9J4 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
USP42Q9H9J4 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
USP42Q9H9J4 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC25.57■■□□□ 1.68
USP42Q9H9J4 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC25.57■■□□□ 1.68
USP42Q9H9J4 AL121906.2-201ENST00000621597 723 ntBASIC25.57■■□□□ 1.68
USP42Q9H9J4 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC25.57■■□□□ 1.68
USP42Q9H9J4 GLDC-219ENST00000640208 420 ntTSL 2 BASIC25.57■■□□□ 1.68
USP42Q9H9J4 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC25.56■■□□□ 1.68
USP42Q9H9J4 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC25.56■■□□□ 1.68
USP42Q9H9J4 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
USP42Q9H9J4 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
USP42Q9H9J4 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC25.56■■□□□ 1.68
USP42Q9H9J4 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC25.56■■□□□ 1.68
USP42Q9H9J4 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
USP42Q9H9J4 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC25.56■■□□□ 1.68
USP42Q9H9J4 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC25.56■■□□□ 1.68
USP42Q9H9J4 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC25.56■■□□□ 1.68
USP42Q9H9J4 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC25.56■■□□□ 1.68
USP42Q9H9J4 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC25.56■■□□□ 1.68
USP42Q9H9J4 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC25.56■■□□□ 1.68
USP42Q9H9J4 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC25.56■■□□□ 1.68
USP42Q9H9J4 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
USP42Q9H9J4 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC25.56■■□□□ 1.68
USP42Q9H9J4 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC25.55■■□□□ 1.68
USP42Q9H9J4 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC25.55■■□□□ 1.68
USP42Q9H9J4 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC25.55■■□□□ 1.68
USP42Q9H9J4 UNC93B2-201ENST00000285383 730 ntBASIC25.55■■□□□ 1.68
USP42Q9H9J4 AC113347.1-201ENST00000413321 391 ntBASIC25.55■■□□□ 1.68
USP42Q9H9J4 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC25.55■■□□□ 1.68
USP42Q9H9J4 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC25.55■■□□□ 1.68
USP42Q9H9J4 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
USP42Q9H9J4 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC25.55■■□□□ 1.68
USP42Q9H9J4 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
USP42Q9H9J4 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
USP42Q9H9J4 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC25.54■■□□□ 1.68
USP42Q9H9J4 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
USP42Q9H9J4 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC25.54■■□□□ 1.68
USP42Q9H9J4 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC25.54■■□□□ 1.68
USP42Q9H9J4 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC25.54■■□□□ 1.68
USP42Q9H9J4 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC25.54■■□□□ 1.68
USP42Q9H9J4 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC25.54■■□□□ 1.68
USP42Q9H9J4 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC25.54■■□□□ 1.68
USP42Q9H9J4 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC25.54■■□□□ 1.68
USP42Q9H9J4 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
USP42Q9H9J4 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
USP42Q9H9J4 AL137060.1-201ENST00000618151 2648 ntBASIC25.53■■□□□ 1.68
USP42Q9H9J4 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC25.53■■□□□ 1.68
USP42Q9H9J4 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
USP42Q9H9J4 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
USP42Q9H9J4 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC25.53■■□□□ 1.68
USP42Q9H9J4 PNN-205ENST00000556530 601 ntTSL 2 BASIC25.53■■□□□ 1.68
USP42Q9H9J4 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
USP42Q9H9J4 AL031963.3-201ENST00000606441 850 ntBASIC25.53■■□□□ 1.68
USP42Q9H9J4 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
USP42Q9H9J4 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC25.53■■□□□ 1.68
USP42Q9H9J4 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC25.53■■□□□ 1.68
USP42Q9H9J4 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC25.53■■□□□ 1.68
USP42Q9H9J4 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
USP42Q9H9J4 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC25.53■■□□□ 1.68
USP42Q9H9J4 AC011484.1-201ENST00000377652 1995 ntBASIC25.53■■□□□ 1.68
USP42Q9H9J4 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
USP42Q9H9J4 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC25.52■■□□□ 1.68
USP42Q9H9J4 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
USP42Q9H9J4 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
USP42Q9H9J4 MIR1238-201ENST00000408483 83 ntBASIC25.52■■□□□ 1.68
USP42Q9H9J4 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC25.52■■□□□ 1.68
USP42Q9H9J4 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC25.52■■□□□ 1.68
USP42Q9H9J4 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
USP42Q9H9J4 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC25.52■■□□□ 1.68
USP42Q9H9J4 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
USP42Q9H9J4 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC25.52■■□□□ 1.68
USP42Q9H9J4 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC25.52■■□□□ 1.68
USP42Q9H9J4 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
USP42Q9H9J4 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC25.52■■□□□ 1.68
USP42Q9H9J4 DUT-205ENST00000558813 769 ntTSL 2 BASIC25.52■■□□□ 1.68
USP42Q9H9J4 TPM1-226ENST00000560959 925 ntTSL 2 BASIC25.52■■□□□ 1.68
USP42Q9H9J4 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC25.52■■□□□ 1.68
USP42Q9H9J4 PALM-208ENST00000592155 2272 ntTSL 4 BASIC25.51■■□□□ 1.67
USP42Q9H9J4 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC25.51■■□□□ 1.67
USP42Q9H9J4 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
USP42Q9H9J4 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
USP42Q9H9J4 KRT18P57-201ENST00000443599 1254 ntBASIC25.51■■□□□ 1.67
USP42Q9H9J4 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC25.51■■□□□ 1.67
USP42Q9H9J4 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
USP42Q9H9J4 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC25.5■■□□□ 1.67
USP42Q9H9J4 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC25.5■■□□□ 1.67
USP42Q9H9J4 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC25.5■■□□□ 1.67
USP42Q9H9J4 LINC01568-207ENST00000641790 1380 ntBASIC25.5■■□□□ 1.67
USP42Q9H9J4 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms