Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC21.95■■□□□ 1.1
TRAIPQ9BWF2 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
TRAIPQ9BWF2 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
TRAIPQ9BWF2 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC21.95■■□□□ 1.1
TRAIPQ9BWF2 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC21.95■■□□□ 1.1
TRAIPQ9BWF2 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC21.95■■□□□ 1.1
TRAIPQ9BWF2 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC21.95■■□□□ 1.1
TRAIPQ9BWF2 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC21.95■■□□□ 1.1
TRAIPQ9BWF2 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC21.95■■□□□ 1.1
TRAIPQ9BWF2 AC110285.5-201ENST00000611501 352 ntBASIC21.95■■□□□ 1.1
TRAIPQ9BWF2 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
TRAIPQ9BWF2 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
TRAIPQ9BWF2 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
TRAIPQ9BWF2 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
TRAIPQ9BWF2 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC21.95■■□□□ 1.1
TRAIPQ9BWF2 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC21.95■■□□□ 1.1
TRAIPQ9BWF2 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
TRAIPQ9BWF2 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
TRAIPQ9BWF2 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
TRAIPQ9BWF2 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
TRAIPQ9BWF2 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
TRAIPQ9BWF2 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
TRAIPQ9BWF2 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
TRAIPQ9BWF2 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
TRAIPQ9BWF2 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
TRAIPQ9BWF2 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
TRAIPQ9BWF2 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
TRAIPQ9BWF2 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
TRAIPQ9BWF2 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
TRAIPQ9BWF2 AC239809.2-201ENST00000415381 517 ntBASIC21.94■■□□□ 1.1
TRAIPQ9BWF2 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
TRAIPQ9BWF2 ARL16-209ENST00000573715 763 ntTSL 3 BASIC21.94■■□□□ 1.1
TRAIPQ9BWF2 ARL16-211ENST00000576135 694 ntTSL 3 BASIC21.94■■□□□ 1.1
TRAIPQ9BWF2 AC233702.5-201ENST00000584107 538 ntBASIC21.94■■□□□ 1.1
TRAIPQ9BWF2 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
TRAIPQ9BWF2 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
TRAIPQ9BWF2 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
TRAIPQ9BWF2 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC21.94■■□□□ 1.1
TRAIPQ9BWF2 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
TRAIPQ9BWF2 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC21.94■■□□□ 1.1
TRAIPQ9BWF2 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
TRAIPQ9BWF2 AC073130.3-201ENST00000624389 2278 ntBASIC21.94■■□□□ 1.1
TRAIPQ9BWF2 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
TRAIPQ9BWF2 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.93■■□□□ 1.1
TRAIPQ9BWF2 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
TRAIPQ9BWF2 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
TRAIPQ9BWF2 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
TRAIPQ9BWF2 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
TRAIPQ9BWF2 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC21.93■■□□□ 1.1
TRAIPQ9BWF2 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
TRAIPQ9BWF2 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC21.93■■□□□ 1.1
TRAIPQ9BWF2 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC21.93■■□□□ 1.1
TRAIPQ9BWF2 AL121829.2-201ENST00000620908 328 ntBASIC21.93■■□□□ 1.1
TRAIPQ9BWF2 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
TRAIPQ9BWF2 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
TRAIPQ9BWF2 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC21.92■■□□□ 1.1
TRAIPQ9BWF2 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
TRAIPQ9BWF2 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
TRAIPQ9BWF2 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
TRAIPQ9BWF2 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
TRAIPQ9BWF2 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
TRAIPQ9BWF2 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
TRAIPQ9BWF2 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
TRAIPQ9BWF2 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
TRAIPQ9BWF2 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
TRAIPQ9BWF2 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
TRAIPQ9BWF2 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
TRAIPQ9BWF2 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
TRAIPQ9BWF2 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
TRAIPQ9BWF2 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC21.92■■□□□ 1.1
TRAIPQ9BWF2 RPS2P55-201ENST00000397318 883 ntBASIC21.92■■□□□ 1.1
TRAIPQ9BWF2 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC21.92■■□□□ 1.1
TRAIPQ9BWF2 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
TRAIPQ9BWF2 AC107956.1-201ENST00000494359 873 ntBASIC21.92■■□□□ 1.1
TRAIPQ9BWF2 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC21.92■■□□□ 1.1
TRAIPQ9BWF2 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC21.92■■□□□ 1.1
TRAIPQ9BWF2 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC21.92■■□□□ 1.1
TRAIPQ9BWF2 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
TRAIPQ9BWF2 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
TRAIPQ9BWF2 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC21.92■■□□□ 1.1
TRAIPQ9BWF2 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC21.92■■□□□ 1.1
TRAIPQ9BWF2 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
TRAIPQ9BWF2 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
TRAIPQ9BWF2 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC21.91■■□□□ 1.1
TRAIPQ9BWF2 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC21.91■■□□□ 1.1
TRAIPQ9BWF2 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
TRAIPQ9BWF2 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
TRAIPQ9BWF2 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
TRAIPQ9BWF2 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC21.91■■□□□ 1.1
TRAIPQ9BWF2 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC21.91■■□□□ 1.1
TRAIPQ9BWF2 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
TRAIPQ9BWF2 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
TRAIPQ9BWF2 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
TRAIPQ9BWF2 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
TRAIPQ9BWF2 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
TRAIPQ9BWF2 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
TRAIPQ9BWF2 AL135905.2-201ENST00000584934 1404 ntBASIC21.9■■□□□ 1.1
TRAIPQ9BWF2 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC21.9■■□□□ 1.1
TRAIPQ9BWF2 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
TRAIPQ9BWF2 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC21.9■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms