Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PAAF1Q9BRP4 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PAAF1Q9BRP4 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
PAAF1Q9BRP4 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PAAF1Q9BRP4 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC21.44■■□□□ 1.02
PAAF1Q9BRP4 AL137060.1-201ENST00000618151 2648 ntBASIC21.44■■□□□ 1.02
PAAF1Q9BRP4 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PAAF1Q9BRP4 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC21.44■■□□□ 1.02
PAAF1Q9BRP4 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC21.44■■□□□ 1.02
PAAF1Q9BRP4 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PAAF1Q9BRP4 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC21.44■■□□□ 1.02
PAAF1Q9BRP4 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PAAF1Q9BRP4 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PAAF1Q9BRP4 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PAAF1Q9BRP4 GXYLT1P3-201ENST00000453058 1193 ntBASIC21.44■■□□□ 1.02
PAAF1Q9BRP4 AL121906.2-201ENST00000621597 723 ntBASIC21.44■■□□□ 1.02
PAAF1Q9BRP4 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PAAF1Q9BRP4 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC21.44■■□□□ 1.02
PAAF1Q9BRP4 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC21.44■■□□□ 1.02
PAAF1Q9BRP4 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PAAF1Q9BRP4 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PAAF1Q9BRP4 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PAAF1Q9BRP4 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PAAF1Q9BRP4 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
PAAF1Q9BRP4 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
PAAF1Q9BRP4 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PAAF1Q9BRP4 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PAAF1Q9BRP4 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PAAF1Q9BRP4 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
PAAF1Q9BRP4 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PAAF1Q9BRP4 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC21.43■■□□□ 1.02
PAAF1Q9BRP4 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC21.43■■□□□ 1.02
PAAF1Q9BRP4 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC21.43■■□□□ 1.02
PAAF1Q9BRP4 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC21.43■■□□□ 1.02
PAAF1Q9BRP4 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC21.43■■□□□ 1.02
PAAF1Q9BRP4 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC21.43■■□□□ 1.02
PAAF1Q9BRP4 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC21.43■■□□□ 1.02
PAAF1Q9BRP4 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
PAAF1Q9BRP4 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
PAAF1Q9BRP4 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC21.42■■□□□ 1.02
PAAF1Q9BRP4 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
PAAF1Q9BRP4 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PAAF1Q9BRP4 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC21.42■■□□□ 1.02
PAAF1Q9BRP4 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC21.42■■□□□ 1.02
PAAF1Q9BRP4 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC21.42■■□□□ 1.02
PAAF1Q9BRP4 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC21.42■■□□□ 1.02
PAAF1Q9BRP4 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC21.42■■□□□ 1.02
PAAF1Q9BRP4 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC21.42■■□□□ 1.02
PAAF1Q9BRP4 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC21.41■■□□□ 1.02
PAAF1Q9BRP4 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC21.41■■□□□ 1.02
PAAF1Q9BRP4 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
PAAF1Q9BRP4 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PAAF1Q9BRP4 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
PAAF1Q9BRP4 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
PAAF1Q9BRP4 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PAAF1Q9BRP4 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PAAF1Q9BRP4 KRT16P5-201ENST00000455284 522 ntBASIC21.41■■□□□ 1.02
PAAF1Q9BRP4 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC21.41■■□□□ 1.02
PAAF1Q9BRP4 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC21.41■■□□□ 1.02
PAAF1Q9BRP4 PENK-204ENST00000518770 863 ntTSL 2 BASIC21.41■■□□□ 1.02
PAAF1Q9BRP4 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC21.41■■□□□ 1.02
PAAF1Q9BRP4 MAX-217ENST00000557277 728 ntTSL 3 BASIC21.41■■□□□ 1.02
PAAF1Q9BRP4 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
PAAF1Q9BRP4 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC21.41■■□□□ 1.02
PAAF1Q9BRP4 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC21.41■■□□□ 1.02
PAAF1Q9BRP4 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PAAF1Q9BRP4 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC21.41■■□□□ 1.02
PAAF1Q9BRP4 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
PAAF1Q9BRP4 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PAAF1Q9BRP4 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC21.4■■□□□ 1.02
PAAF1Q9BRP4 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
PAAF1Q9BRP4 AL135905.2-201ENST00000584934 1404 ntBASIC21.4■■□□□ 1.02
PAAF1Q9BRP4 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC21.4■■□□□ 1.02
PAAF1Q9BRP4 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
PAAF1Q9BRP4 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
PAAF1Q9BRP4 HTR7P1-201ENST00000538670 1336 ntBASIC21.4■■□□□ 1.02
PAAF1Q9BRP4 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC21.4■■□□□ 1.02
PAAF1Q9BRP4 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC21.4■■□□□ 1.02
PAAF1Q9BRP4 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
PAAF1Q9BRP4 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
PAAF1Q9BRP4 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC21.4■■□□□ 1.02
PAAF1Q9BRP4 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
PAAF1Q9BRP4 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC21.4■■□□□ 1.02
PAAF1Q9BRP4 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
PAAF1Q9BRP4 AC092720.2-201ENST00000602388 1665 ntBASIC21.4■■□□□ 1.02
PAAF1Q9BRP4 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PAAF1Q9BRP4 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
PAAF1Q9BRP4 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PAAF1Q9BRP4 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC21.4■■□□□ 1.02
PAAF1Q9BRP4 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
PAAF1Q9BRP4 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
PAAF1Q9BRP4 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC21.39■■□□□ 1.02
PAAF1Q9BRP4 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC21.39■■□□□ 1.02
PAAF1Q9BRP4 SMG8-203ENST00000578922 2178 ntBASIC21.39■■□□□ 1.01
PAAF1Q9BRP4 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
PAAF1Q9BRP4 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PAAF1Q9BRP4 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
PAAF1Q9BRP4 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PAAF1Q9BRP4 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
PAAF1Q9BRP4 TREX2-204ENST00000370212 861 ntTSL 5 BASIC21.39■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms