Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00643Q86TS7 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00643Q86TS7 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00643Q86TS7 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00643Q86TS7 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00643Q86TS7 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC12.56□□□□□ -0.4
LINC00643Q86TS7 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC12.56□□□□□ -0.4
LINC00643Q86TS7 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC12.56□□□□□ -0.4
LINC00643Q86TS7 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00643Q86TS7 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00643Q86TS7 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00643Q86TS7 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC12.56□□□□□ -0.4
LINC00643Q86TS7 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00643Q86TS7 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00643Q86TS7 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00643Q86TS7 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC12.56□□□□□ -0.4
LINC00643Q86TS7 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC12.56□□□□□ -0.4
LINC00643Q86TS7 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00643Q86TS7 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00643Q86TS7 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC12.56□□□□□ -0.4
LINC00643Q86TS7 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00643Q86TS7 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC12.56□□□□□ -0.4
LINC00643Q86TS7 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00643Q86TS7 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
LINC00643Q86TS7 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00643Q86TS7 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC12.56□□□□□ -0.4
LINC00643Q86TS7 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC12.56□□□□□ -0.4
LINC00643Q86TS7 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC12.56□□□□□ -0.4
LINC00643Q86TS7 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC12.56□□□□□ -0.4
LINC00643Q86TS7 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00643Q86TS7 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00643Q86TS7 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC12.56□□□□□ -0.4
LINC00643Q86TS7 AC131274.2-201ENST00000580697 1507 ntBASIC12.56□□□□□ -0.4
LINC00643Q86TS7 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00643Q86TS7 AC046158.3-201ENST00000624947 2558 ntBASIC12.56□□□□□ -0.4
LINC00643Q86TS7 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC12.56□□□□□ -0.4
LINC00643Q86TS7 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC12.56□□□□□ -0.4
LINC00643Q86TS7 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00643Q86TS7 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00643Q86TS7 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC12.56□□□□□ -0.4
LINC00643Q86TS7 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC12.56□□□□□ -0.4
LINC00643Q86TS7 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC12.56□□□□□ -0.4
LINC00643Q86TS7 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC12.55□□□□□ -0.4
LINC00643Q86TS7 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00643Q86TS7 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
LINC00643Q86TS7 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC12.55□□□□□ -0.4
LINC00643Q86TS7 CROCCP1-201ENST00000426910 5675 ntBASIC12.55□□□□□ -0.4
LINC00643Q86TS7 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00643Q86TS7 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00643Q86TS7 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC12.55□□□□□ -0.4
LINC00643Q86TS7 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00643Q86TS7 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00643Q86TS7 AL354751.1-201ENST00000412768 1863 ntBASIC12.55□□□□□ -0.4
LINC00643Q86TS7 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC12.55□□□□□ -0.4
LINC00643Q86TS7 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00643Q86TS7 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00643Q86TS7 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00643Q86TS7 AC090164.3-201ENST00000610780 2143 ntBASIC12.55□□□□□ -0.4
LINC00643Q86TS7 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC12.55□□□□□ -0.4
LINC00643Q86TS7 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
LINC00643Q86TS7 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC12.55□□□□□ -0.4
LINC00643Q86TS7 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00643Q86TS7 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00643Q86TS7 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC12.55□□□□□ -0.4
LINC00643Q86TS7 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00643Q86TS7 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC12.55□□□□□ -0.4
LINC00643Q86TS7 AC008813.1-201ENST00000536597 885 ntBASIC12.55□□□□□ -0.4
LINC00643Q86TS7 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC12.55□□□□□ -0.4
LINC00643Q86TS7 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC12.55□□□□□ -0.4
LINC00643Q86TS7 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC12.55□□□□□ -0.4
LINC00643Q86TS7 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00643Q86TS7 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00643Q86TS7 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00643Q86TS7 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
LINC00643Q86TS7 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00643Q86TS7 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
LINC00643Q86TS7 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00643Q86TS7 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00643Q86TS7 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00643Q86TS7 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC12.55□□□□□ -0.4
LINC00643Q86TS7 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00643Q86TS7 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00643Q86TS7 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00643Q86TS7 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC12.55□□□□□ -0.4
LINC00643Q86TS7 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00643Q86TS7 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00643Q86TS7 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00643Q86TS7 CROCCP3-202ENST00000420820 1947 ntBASIC12.54□□□□□ -0.4
LINC00643Q86TS7 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC12.54□□□□□ -0.4
LINC00643Q86TS7 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
LINC00643Q86TS7 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC12.54□□□□□ -0.4
LINC00643Q86TS7 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00643Q86TS7 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
LINC00643Q86TS7 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC12.54□□□□□ -0.4
LINC00643Q86TS7 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00643Q86TS7 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00643Q86TS7 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC12.54□□□□□ -0.4
LINC00643Q86TS7 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
LINC00643Q86TS7 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00643Q86TS7 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms